Variant report

Variant	rs10913874
Chromosome Location	chr1:179709168-179709169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:179709020-179709170	GM12867	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179708967..179710508-chr1:179712204..179714164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243062	TF binding region
FAM163A	TF binding region
ENSG00000143340	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1052447	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10798718	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10798719	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10798720	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10798721	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10913868	0.81[JPT][hapmap]
rs10913875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10913877	1.00[ASN][1000 genomes]
rs10913878	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10913879	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11578918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11588754	0.80[ASN][1000 genomes]
rs12047821	0.99[ASN][1000 genomes]
rs12408874	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12408882	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16854629	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2245195	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2245610	0.85[ASN][1000 genomes]
rs2245702	0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs2318389	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2454193	0.89[ASN][1000 genomes]
rs2454195	1.00[ASN][1000 genomes]
rs2454196	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2454197	0.87[ASN][1000 genomes]
rs2487739	0.97[ASN][1000 genomes]
rs2487740	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2504032	0.82[ASN][1000 genomes]
rs2504033	0.82[ASN][1000 genomes]
rs2504034	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs2504035	0.85[ASN][1000 genomes]
rs2504038	0.85[ASN][1000 genomes]
rs2504039	1.00[ASN][1000 genomes]
rs2504040	1.00[ASN][1000 genomes]
rs2504041	1.00[ASN][1000 genomes]
rs2504042	1.00[ASN][1000 genomes]
rs2504043	0.85[ASN][1000 genomes]
rs2504048	0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs2504049	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs2504053	0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs3843267	0.81[JPT][hapmap];0.91[MEX][hapmap]
rs3845381	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3845382	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3845383	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3856045	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3897919	0.81[JPT][hapmap]
rs3905117	0.81[JPT][hapmap]
rs3909014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3909015	1.00[ASN][1000 genomes]
rs4269737	0.91[ASN][1000 genomes]
rs4469684	1.00[ASN][1000 genomes]
rs4511077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4651050	0.96[ASN][1000 genomes]
rs60556788	0.97[ASN][1000 genomes]
rs61828370	0.99[ASN][1000 genomes]
rs6663482	1.00[ASN][1000 genomes]
rs7365663	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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