Variant report
| Variant | rs11588754 |
|---|---|
| Chromosome Location | chr1:179726753-179726754 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:179726467..179730453-chr1:179732231..179735886,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs1052447 | 0.80[ASN][1000 genomes] |
| rs10798718 | 0.80[ASN][1000 genomes] |
| rs10798719 | 0.81[ASN][1000 genomes] |
| rs10798720 | 0.81[ASN][1000 genomes] |
| rs10798721 | 0.81[ASN][1000 genomes] |
| rs10913874 | 0.80[ASN][1000 genomes] |
| rs10913876 | 0.80[ASN][1000 genomes] |
| rs10913877 | 0.80[ASN][1000 genomes] |
| rs10913878 | 0.80[ASN][1000 genomes] |
| rs10913879 | 0.81[ASN][1000 genomes] |
| rs12047821 | 0.82[ASN][1000 genomes] |
| rs12408874 | 0.80[ASN][1000 genomes] |
| rs12408882 | 0.80[ASN][1000 genomes] |
| rs2245195 | 0.80[ASN][1000 genomes] |
| rs2245610 | 0.95[ASN][1000 genomes] |
| rs2245702 | 0.95[ASN][1000 genomes] |
| rs2318389 | 0.80[ASN][1000 genomes] |
| rs2454195 | 0.80[ASN][1000 genomes] |
| rs2454196 | 0.80[ASN][1000 genomes] |
| rs2454197 | 0.93[ASN][1000 genomes] |
| rs2487739 | 0.83[ASN][1000 genomes] |
| rs2487740 | 0.80[ASN][1000 genomes] |
| rs2487746 | 0.89[ASN][1000 genomes] |
| rs2504032 | 0.88[ASN][1000 genomes] |
| rs2504033 | 0.92[ASN][1000 genomes] |
| rs2504035 | 0.95[ASN][1000 genomes] |
| rs2504038 | 0.94[ASN][1000 genomes] |
| rs2504039 | 0.80[ASN][1000 genomes] |
| rs2504040 | 0.80[ASN][1000 genomes] |
| rs2504041 | 0.80[ASN][1000 genomes] |
| rs2504042 | 0.80[ASN][1000 genomes] |
| rs2504043 | 0.95[ASN][1000 genomes] |
| rs2504048 | 0.95[ASN][1000 genomes] |
| rs2504049 | 0.95[ASN][1000 genomes] |
| rs3845381 | 0.80[ASN][1000 genomes] |
| rs3856045 | 0.80[ASN][1000 genomes] |
| rs3909014 | 0.81[ASN][1000 genomes] |
| rs3909015 | 0.80[ASN][1000 genomes] |
| rs4469684 | 0.80[ASN][1000 genomes] |
| rs4511077 | 0.80[ASN][1000 genomes] |
| rs6663482 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009961 | chr1:179714247-179790110 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179723600-179727600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
