Variant report

Variant	rs2504035
Chromosome Location	chr1:179709512-179709513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179708967..179710508-chr1:179712204..179714164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143340	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1052447	0.85[ASN][1000 genomes]
rs10798718	0.85[ASN][1000 genomes]
rs10798719	0.85[ASN][1000 genomes]
rs10798720	0.85[ASN][1000 genomes]
rs10798721	0.85[ASN][1000 genomes]
rs10913874	0.85[ASN][1000 genomes]
rs10913876	0.85[ASN][1000 genomes]
rs10913877	0.85[ASN][1000 genomes]
rs10913878	0.85[ASN][1000 genomes]
rs10913879	0.85[ASN][1000 genomes]
rs11588754	0.95[ASN][1000 genomes]
rs12047821	0.84[ASN][1000 genomes]
rs12408874	0.85[ASN][1000 genomes]
rs12408882	0.85[ASN][1000 genomes]
rs2245195	0.85[ASN][1000 genomes]
rs2245610	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245702	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2318389	0.85[ASN][1000 genomes]
rs2454195	0.85[ASN][1000 genomes]
rs2454196	0.85[ASN][1000 genomes]
rs2454197	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2487739	0.88[ASN][1000 genomes]
rs2487740	0.85[ASN][1000 genomes]
rs2487746	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2504032	0.93[ASN][1000 genomes]
rs2504033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2504038	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2504039	0.85[ASN][1000 genomes]
rs2504040	0.85[ASN][1000 genomes]
rs2504041	0.85[ASN][1000 genomes]
rs2504042	0.85[ASN][1000 genomes]
rs2504043	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504048	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504049	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845381	0.85[ASN][1000 genomes]
rs3845382	0.81[ASN][1000 genomes]
rs3845383	0.81[ASN][1000 genomes]
rs3856045	0.85[ASN][1000 genomes]
rs3909014	0.86[ASN][1000 genomes]
rs3909015	0.85[ASN][1000 genomes]
rs4469684	0.85[ASN][1000 genomes]
rs4511077	0.85[ASN][1000 genomes]
rs4651050	0.82[ASN][1000 genomes]
rs60556788	0.83[ASN][1000 genomes]
rs61828370	0.84[ASN][1000 genomes]
rs6663482	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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