Variant report

Variant	rs2504032
Chromosome Location	chr1:179701403-179701404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1052447	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10798718	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10798719	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs10798720	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs10798721	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs10913874	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10913875	0.86[CHB][hapmap]
rs10913876	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10913877	0.82[ASN][1000 genomes]
rs10913878	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10913879	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs11578918	0.86[CHB][hapmap]
rs11588754	0.88[ASN][1000 genomes]
rs12047821	0.81[ASN][1000 genomes]
rs12408874	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs12408882	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1498123	0.80[JPT][hapmap]
rs16854629	0.86[CHB][hapmap]
rs2245195	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2245610	0.93[ASN][1000 genomes]
rs2245702	0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2318389	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2454195	0.82[ASN][1000 genomes]
rs2454196	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2454197	0.91[ASN][1000 genomes]
rs2487739	0.85[ASN][1000 genomes]
rs2487740	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2487746	0.86[ASN][1000 genomes]
rs2504033	0.96[ASN][1000 genomes]
rs2504034	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2504035	0.93[ASN][1000 genomes]
rs2504038	0.92[ASN][1000 genomes]
rs2504039	0.82[ASN][1000 genomes]
rs2504040	0.82[ASN][1000 genomes]
rs2504041	0.82[ASN][1000 genomes]
rs2504042	0.82[ASN][1000 genomes]
rs2504043	0.93[ASN][1000 genomes]
rs2504048	0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2504049	0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs3845381	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs3845382	0.81[CHB][hapmap]
rs3856045	0.82[ASN][1000 genomes]
rs3909014	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs3909015	0.82[ASN][1000 genomes]
rs4469684	0.82[ASN][1000 genomes]
rs4511077	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs4651050	0.85[ASN][1000 genomes]
rs60556788	0.80[ASN][1000 genomes]
rs61828370	0.81[ASN][1000 genomes]
rs6663482	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179701400-179703000	Weak transcription	Fetal Brain Female	brain

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