Variant report

Variant	rs4269737
Chromosome Location	chr1:179724032-179724033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179723816..179726381-chr1:179730633..179732680,2	K562	blood:
2	chr1:179713754..179715803-chr1:179723110..179724876,2	K562	blood:
3	chr1:179720423..179722014-chr1:179723830..179726146,2	K562	blood:
4	chr1:179715653..179718045-chr1:179722223..179724406,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1052447	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10798718	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10798719	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798720	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798721	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10913868	0.84[EUR][1000 genomes]
rs10913870	0.84[EUR][1000 genomes]
rs10913871	0.84[EUR][1000 genomes]
rs10913872	0.84[EUR][1000 genomes]
rs10913874	0.91[ASN][1000 genomes]
rs10913876	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913877	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913878	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913879	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12037882	0.84[EUR][1000 genomes]
rs12047821	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12403719	0.84[EUR][1000 genomes]
rs12403967	0.84[EUR][1000 genomes]
rs12408874	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408882	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12562455	0.84[EUR][1000 genomes]
rs12565113	0.84[EUR][1000 genomes]
rs12737143	0.84[EUR][1000 genomes]
rs2245195	0.91[ASN][1000 genomes]
rs2318386	0.84[EUR][1000 genomes]
rs2318389	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2454193	0.80[ASN][1000 genomes]
rs2454195	0.91[ASN][1000 genomes]
rs2454196	0.91[ASN][1000 genomes]
rs2487739	0.88[ASN][1000 genomes]
rs2487740	0.91[ASN][1000 genomes]
rs2504039	0.91[ASN][1000 genomes]
rs2504040	0.91[ASN][1000 genomes]
rs2504041	0.91[ASN][1000 genomes]
rs2504042	0.91[ASN][1000 genomes]
rs2504053	0.84[ASN][1000 genomes]
rs3845381	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3845382	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3845383	0.86[ASN][1000 genomes]
rs3856045	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3909014	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3909015	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4266841	0.84[EUR][1000 genomes]
rs4469684	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4511077	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4565670	0.83[EUR][1000 genomes]
rs4651050	0.87[ASN][1000 genomes]
rs60556788	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61828370	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6663482	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7365663	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv33942	chr1:179722838-179724322	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179723600-179727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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