Variant report

Variant	rs35859208
Chromosome Location	chr15:42972303-42972304
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42957477..42963934-chr15:42964860..42973083,9	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv517553	chr15:42970899-43023482	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
2	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:42942800-42973600	Weak transcription	Psoas Muscle	Psoas
5	chr15:42945200-42973400	Weak transcription	Thymus	Thymus
6	chr15:42949800-42999200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:42950400-42990200	Strong transcription	Fetal Stomach	stomach
8	chr15:42951000-42995000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:42952200-42973400	Weak transcription	Gastric	stomach
10	chr15:42952600-42979000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:42952600-42995600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:42952800-42996000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:42953400-42992200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:42954200-42973600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:42954400-42976200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:42954600-42986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:42954800-42983000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:42955000-42990200	Strong transcription	Fetal Muscle Leg	muscle
19	chr15:42955200-42974000	Weak transcription	Esophagus	oesophagus
20	chr15:42956000-42976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:42956800-42973600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:42957000-42976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:42960000-42973400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:42960000-42981800	Strong transcription	Primary T cells from cord blood	blood
25	chr15:42960200-42973800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:42961000-42977600	Weak transcription	Small Intestine	intestine
27	chr15:42961200-42973800	Weak transcription	Fetal Thymus	thymus
28	chr15:42961200-42989200	Strong transcription	Ovary	ovary
29	chr15:42961400-42990800	Strong transcription	Colon Smooth Muscle	Colon
30	chr15:42961600-42989200	Weak transcription	Pancreas	Pancrea
31	chr15:42961800-42975000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:42962000-42974000	Weak transcription	HSMMtube	muscle
33	chr15:42963800-42976200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:42964200-42982400	Weak transcription	A549	lung
35	chr15:42964600-42972800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:42964600-42979200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:42965000-42982200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:42966000-42972400	Strong transcription	Placenta	Placenta
39	chr15:42966000-42992800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:42966400-42978400	Weak transcription	Dnd41	blood
41	chr15:42966400-42988400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:42966400-42988600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:42966600-42979400	Strong transcription	Spleen	Spleen
44	chr15:42966600-42979800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:42966600-42982400	Strong transcription	Fetal Brain Female	brain
46	chr15:42966600-42982800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr15:42966600-42988000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:42966600-42989200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:42966800-42972400	Strong transcription	Brain Germinal Matrix	brain
50	chr15:42966800-42987600	Strong transcription	Aorta	Aorta

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