Variant report

Variant	rs35870821
Chromosome Location	chr2:180695275-180695276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12998578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13024417	0.94[EUR][1000 genomes]
rs165375	0.94[EUR][1000 genomes]
rs165377	0.94[EUR][1000 genomes]
rs165384	1.00[EUR][1000 genomes]
rs259814	0.84[EUR][1000 genomes]
rs259815	0.84[EUR][1000 genomes]
rs259832	1.00[EUR][1000 genomes]
rs357717	1.00[EUR][1000 genomes]
rs357718	0.84[EUR][1000 genomes]
rs6709255	1.00[EUR][1000 genomes]
rs71425646	1.00[EUR][1000 genomes]
rs73048563	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180691200-180696600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:180691200-180696600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:180691400-180696600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:180691800-180697000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:180692000-180702000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:180692000-180704400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:180695000-180696600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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