Variant report

Variant	rs35875212
Chromosome Location	chr20:13630552-13630553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12106089	0.88[EUR][1000 genomes]
rs13038057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13041435	0.94[EUR][1000 genomes]
rs13041895	0.97[EUR][1000 genomes]
rs13045526	0.87[EUR][1000 genomes]
rs13045616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16994005	0.85[AMR][1000 genomes]
rs16994088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16994094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16994097	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34527054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34892632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34970733	0.81[EUR][1000 genomes]
rs35023928	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35026915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35114574	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35652905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35954536	0.81[EUR][1000 genomes]
rs36033897	0.94[EUR][1000 genomes]
rs59771854	0.94[EUR][1000 genomes]
rs6042274	0.84[EUR][1000 genomes]
rs6042275	0.84[EUR][1000 genomes]
rs6042284	0.84[EUR][1000 genomes]
rs6105146	0.84[EUR][1000 genomes]
rs6109966	0.80[EUR][1000 genomes]
rs62207617	0.86[EUR][1000 genomes]
rs62207642	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62207643	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62207644	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74178049	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74178050	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1061323	chr20:13551004-13746346	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv531478	chr20:13580524-13814797	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13620200-13634800	Weak transcription	Right Atrium	heart
2	chr20:13625800-13631400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:13628800-13631600	Enhancers	Fetal Muscle Leg	muscle
4	chr20:13629000-13630600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:13629000-13630800	Enhancers	Fetal Muscle Trunk	muscle
6	chr20:13629000-13631000	Enhancers	Fetal Stomach	stomach
7	chr20:13629200-13631600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:13629200-13631600	Enhancers	Fetal Lung	lung
9	chr20:13629400-13631000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr20:13629400-13631600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr20:13629600-13631000	Weak transcription	Fetal Brain Female	brain
12	chr20:13629800-13631400	Weak transcription	Spleen	Spleen
13	chr20:13630000-13630600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:13630000-13631000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:13630000-13631000	Enhancers	Ovary	ovary
16	chr20:13630000-13631200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr20:13630000-13631400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr20:13630000-13631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr20:13630000-13631600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr20:13630000-13631600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr20:13630000-13631800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr20:13630200-13630600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr20:13630200-13630800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr20:13630200-13630800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr20:13630200-13631000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:13630400-13630600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
27	chr20:13630400-13631000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr20:13630400-13631000	Enhancers	Stomach Smooth Muscle	stomach

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