Variant report
Variant | rs6042274 |
---|---|
Chromosome Location | chr20:13627033-13627034 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:13620591..13622927-chr20:13625595..13627340,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1024208 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs1028849 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs12479594 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs12479746 | 1.00[ASN][1000 genomes] |
rs12480131 | 1.00[ASN][1000 genomes] |
rs12480277 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs12480426 | 1.00[ASN][1000 genomes] |
rs12480587 | 1.00[JPT][hapmap] |
rs12481107 | 1.00[ASN][1000 genomes] |
rs13038057 | 0.84[EUR][1000 genomes] |
rs13041895 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs13045616 | 0.84[EUR][1000 genomes] |
rs16994088 | 0.84[EUR][1000 genomes] |
rs16994094 | 0.84[EUR][1000 genomes] |
rs16994097 | 0.84[EUR][1000 genomes] |
rs2180570 | 1.00[ASN][1000 genomes] |
rs34527054 | 0.84[EUR][1000 genomes] |
rs34892632 | 0.84[EUR][1000 genomes] |
rs35023928 | 0.81[EUR][1000 genomes] |
rs35026915 | 0.84[EUR][1000 genomes] |
rs35114574 | 0.81[EUR][1000 genomes] |
rs35652905 | 0.84[EUR][1000 genomes] |
rs35875212 | 0.84[EUR][1000 genomes] |
rs6033712 | 1.00[JPT][hapmap] |
rs6033718 | 1.00[JPT][hapmap] |
rs6033782 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6033802 | 1.00[ASN][1000 genomes] |
rs6042113 | 1.00[JPT][hapmap] |
rs6042130 | 1.00[JPT][hapmap] |
rs6042136 | 1.00[JPT][hapmap] |
rs6042142 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6042143 | 1.00[ASN][1000 genomes] |
rs6042152 | 1.00[ASN][1000 genomes] |
rs6042154 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6042212 | 1.00[JPT][hapmap] |
rs6042234 | 1.00[ASN][1000 genomes] |
rs6042241 | 1.00[ASN][1000 genomes] |
rs6042242 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6042248 | 1.00[ASN][1000 genomes] |
rs6042249 | 1.00[ASN][1000 genomes] |
rs6042275 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6042284 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60686384 | 1.00[ASN][1000 genomes] |
rs6079117 | 1.00[ASN][1000 genomes] |
rs6105108 | 1.00[JPT][hapmap] |
rs6105109 | 1.00[JPT][hapmap] |
rs6105111 | 1.00[ASN][1000 genomes] |
rs6105146 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6109895 | 1.00[JPT][hapmap] |
rs6109896 | 1.00[JPT][hapmap] |
rs6109901 | 1.00[JPT][hapmap] |
rs6109904 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6109972 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6109985 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs61518689 | 1.00[ASN][1000 genomes] |
rs62207643 | 0.81[EUR][1000 genomes] |
rs62207644 | 0.81[EUR][1000 genomes] |
rs7274078 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs73254604 | 1.00[ASN][1000 genomes] |
rs73270770 | 1.00[ASN][1000 genomes] |
rs73899330 | 1.00[ASN][1000 genomes] |
rs74178049 | 0.81[EUR][1000 genomes] |
rs74178050 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1061303 | chr20:13395546-13810990 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv916202 | chr20:13421724-14043615 | Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv1059817 | chr20:13422602-13807968 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
5 | nsv1061323 | chr20:13551004-13746346 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
6 | nsv912689 | chr20:13570331-14155881 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
7 | nsv531478 | chr20:13580524-13814797 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv1059221 | chr20:13589432-13977327 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:13620200-13634800 | Weak transcription | Right Atrium | heart |
2 | chr20:13625800-13631400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |