The 2.0 version of rSNPBase

Variant report

Variant rs12480426
Chromosome Location chr20:13533726-13533727
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13485000-13543600 Weak transcription Small Intestine intestine
2 chr20:13492200-13567000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13497800-13563400 Weak transcription Pancreas Pancrea
4 chr20:13503000-13537600 Weak transcription Psoas Muscle Psoas
5 chr20:13503000-13538200 Weak transcription Ovary ovary
6 chr20:13506400-13558800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:13508000-13534000 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr20:13508000-13542000 Weak transcription Fetal Intestine Small intestine
9 chr20:13508000-13563600 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr20:13508200-13556400 Weak transcription Fetal Muscle Trunk muscle
11 chr20:13508400-13538000 Weak transcription HepG2 liver
12 chr20:13508400-13546600 Weak transcription Fetal Kidney kidney
13 chr20:13508400-13550400 Weak transcription GM12878-XiMat blood
14 chr20:13508400-13556000 Weak transcription HSMM muscle
15 chr20:13508400-13559600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr20:13508400-13563400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr20:13509200-13536200 Weak transcription Fetal Intestine Large intestine
18 chr20:13509200-13548200 Weak transcription Duodenum Mucosa Duodenum
19 chr20:13509200-13556000 Weak transcription Fetal Stomach stomach
20 chr20:13509800-13536200 Weak transcription Fetal Muscle Leg muscle
21 chr20:13509800-13538600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr20:13509800-13547400 Weak transcription Primary T cells fromperipheralblood blood
23 chr20:13512800-13548400 Weak transcription Left Ventricle heart
24 chr20:13512800-13556000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr20:13513800-13547600 Weak transcription Primary hematopoietic stem cells blood
26 chr20:13514000-13536200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr20:13514800-13536600 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr20:13514800-13541000 Weak transcription Primary B cells from peripheral blood blood
29 chr20:13514800-13546400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:13515000-13605600 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr20:13516600-13538200 Weak transcription Thymus Thymus
32 chr20:13526800-13561800 Weak transcription Stomach Mucosa stomach
33 chr20:13526800-13613800 Weak transcription Hela-S3 cervix
34 chr20:13527000-13556000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr20:13527200-13534800 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr20:13527200-13540000 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr20:13527400-13535400 Weak transcription NHEK skin
38 chr20:13527400-13535400 Weak transcription Osteobl bone
39 chr20:13527400-13536800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr20:13527400-13539000 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr20:13527400-13552200 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr20:13527400-13560000 Weak transcription HSMMtube muscle
43 chr20:13527400-13562200 Weak transcription Aorta Aorta
44 chr20:13527400-13563400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr20:13527600-13535200 Weak transcription NH-A brain
46 chr20:13527600-13538200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:13527600-13559600 Weak transcription HMEC breast
48 chr20:13527800-13537200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr20:13527800-13563400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr20:13528000-13533800 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015