The 2.0 version of rSNPBase

Variant report

Variant rs12480101
Chromosome Location chr20:13409232-13409233
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13364400-13415400 Weak transcription Right Ventricle heart
2 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13369000-13411200 Strong transcription Dnd41 blood
4 chr20:13371400-13413600 Weak transcription Ovary ovary
5 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
6 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
7 chr20:13379000-13410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr20:13379200-13463000 Weak transcription HSMM muscle
9 chr20:13392600-13421400 Weak transcription Psoas Muscle Psoas
10 chr20:13392800-13415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr20:13393800-13411000 Weak transcription Pancreas Pancrea
12 chr20:13393800-13416800 Weak transcription Rectal Smooth Muscle rectum
13 chr20:13394000-13415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr20:13394200-13416800 Weak transcription Esophagus oesophagus
15 chr20:13394200-13417200 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr20:13395000-13415000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr20:13395400-13411000 Weak transcription Spleen Spleen
18 chr20:13395600-13416800 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr20:13395600-13477800 Weak transcription Gastric stomach
20 chr20:13396000-13410600 Weak transcription GM12878-XiMat blood
21 chr20:13396000-13415000 Weak transcription Brain Hippocampus Middle brain
22 chr20:13396000-13417000 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr20:13397400-13421200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr20:13397600-13410600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr20:13397800-13414400 Weak transcription Duodenum Mucosa Duodenum
26 chr20:13397800-13415000 Weak transcription Adipose Nuclei Adipose
27 chr20:13398000-13410800 Weak transcription Primary B cells from peripheral blood blood
28 chr20:13398000-13411000 Weak transcription Primary B cells from cord blood blood
29 chr20:13398200-13409600 Weak transcription Fetal Thymus thymus
30 chr20:13398200-13410000 Weak transcription Primary T cells from cord blood blood
31 chr20:13398200-13410200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr20:13398200-13410200 Weak transcription Thymus Thymus
33 chr20:13398200-13410800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr20:13398200-13411000 Weak transcription Lung lung
35 chr20:13398200-13412000 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr20:13398200-13414600 Weak transcription Primary T cells fromperipheralblood blood
37 chr20:13398200-13415000 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr20:13398200-13415000 Weak transcription Aorta Aorta
39 chr20:13398200-13415000 Weak transcription Fetal Intestine Small intestine
40 chr20:13398200-13415000 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr20:13398200-13415000 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr20:13398200-13416800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr20:13398200-13417800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr20:13399600-13410800 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr20:13399800-13410200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr20:13399800-13430800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr20:13400000-13409800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr20:13400600-13411000 Weak transcription Placenta Placenta
49 chr20:13401400-13409800 Weak transcription Fetal Intestine Large intestine
50 chr20:13403600-13409800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015