The 2.0 version of rSNPBase

Variant report

Variant rs6042086
Chromosome Location chr20:13401869-13401870
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13364400-13415400 Weak transcription Right Ventricle heart
2 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13369000-13411200 Strong transcription Dnd41 blood
4 chr20:13371400-13413600 Weak transcription Ovary ovary
5 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
6 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
7 chr20:13374600-13405800 Weak transcription Fetal Stomach stomach
8 chr20:13379000-13410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr20:13379200-13463000 Weak transcription HSMM muscle
10 chr20:13390800-13403000 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr20:13391200-13403400 Weak transcription Fetal Kidney kidney
12 chr20:13392600-13421400 Weak transcription Psoas Muscle Psoas
13 chr20:13392800-13415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr20:13393800-13411000 Weak transcription Pancreas Pancrea
15 chr20:13393800-13416800 Weak transcription Rectal Smooth Muscle rectum
16 chr20:13394000-13403000 Weak transcription HMEC breast
17 chr20:13394000-13415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr20:13394200-13406800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr20:13394200-13416800 Weak transcription Esophagus oesophagus
20 chr20:13394200-13417200 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr20:13395000-13415000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr20:13395400-13411000 Weak transcription Spleen Spleen
23 chr20:13395600-13416800 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr20:13395600-13477800 Weak transcription Gastric stomach
25 chr20:13396000-13410600 Weak transcription GM12878-XiMat blood
26 chr20:13396000-13415000 Weak transcription Brain Hippocampus Middle brain
27 chr20:13396000-13417000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr20:13397400-13421200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr20:13397600-13410600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr20:13397800-13405400 Weak transcription Fetal Lung lung
31 chr20:13397800-13414400 Weak transcription Duodenum Mucosa Duodenum
32 chr20:13397800-13415000 Weak transcription Adipose Nuclei Adipose
33 chr20:13398000-13403200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr20:13398000-13407400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr20:13398000-13410800 Weak transcription Primary B cells from peripheral blood blood
36 chr20:13398000-13411000 Weak transcription Primary B cells from cord blood blood
37 chr20:13398200-13403000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr20:13398200-13403000 Weak transcription NHEK skin
39 chr20:13398200-13403600 Weak transcription H9 Cell Line embryonic stem cell
40 chr20:13398200-13404600 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr20:13398200-13405400 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr20:13398200-13406000 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr20:13398200-13406000 Weak transcription Fetal Muscle Leg muscle
44 chr20:13398200-13406000 Weak transcription Left Ventricle heart
45 chr20:13398200-13409600 Weak transcription Fetal Thymus thymus
46 chr20:13398200-13410000 Weak transcription Primary T cells from cord blood blood
47 chr20:13398200-13410200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr20:13398200-13410200 Weak transcription Thymus Thymus
49 chr20:13398200-13410800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr20:13398200-13411000 Weak transcription Lung lung

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Last update: Aug 31, 2015