The 2.0 version of rSNPBase

Variant report

Variant rs6042082
Chromosome Location chr20:13396953-13396954
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13364400-13415400 Weak transcription Right Ventricle heart
2 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13368600-13397400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr20:13369000-13411200 Strong transcription Dnd41 blood
5 chr20:13369400-13397000 Weak transcription Primary B cells from cord blood blood
6 chr20:13369400-13397200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr20:13369600-13397000 Weak transcription Fetal Thymus thymus
8 chr20:13371400-13413600 Weak transcription Ovary ovary
9 chr20:13371800-13397200 Weak transcription Primary T cells from cord blood blood
10 chr20:13372000-13397400 Weak transcription Primary B cells from peripheral blood blood
11 chr20:13372000-13397400 Weak transcription Left Ventricle heart
12 chr20:13372000-13397400 Weak transcription Thymus Thymus
13 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
14 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
15 chr20:13374600-13397400 Weak transcription Fetal Intestine Small intestine
16 chr20:13374600-13399400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr20:13374600-13405800 Weak transcription Fetal Stomach stomach
18 chr20:13379000-13410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr20:13379200-13463000 Weak transcription HSMM muscle
20 chr20:13380800-13397600 Weak transcription Fetal Lung lung
21 chr20:13383200-13397400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr20:13385200-13397400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr20:13387800-13397600 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr20:13390800-13397400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr20:13390800-13403000 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr20:13391200-13403400 Weak transcription Fetal Kidney kidney
27 chr20:13392200-13397400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr20:13392600-13421400 Weak transcription Psoas Muscle Psoas
29 chr20:13392800-13415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr20:13393800-13397400 Weak transcription Lung lung
31 chr20:13393800-13411000 Weak transcription Pancreas Pancrea
32 chr20:13393800-13416800 Weak transcription Rectal Smooth Muscle rectum
33 chr20:13394000-13397400 Weak transcription Aorta Aorta
34 chr20:13394000-13397400 Weak transcription Stomach Smooth Muscle stomach
35 chr20:13394000-13397800 Weak transcription Placenta Placenta
36 chr20:13394000-13398000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr20:13394000-13403000 Weak transcription HMEC breast
38 chr20:13394000-13415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr20:13394200-13397400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr20:13394200-13397400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr20:13394200-13397400 Weak transcription Liver Liver
42 chr20:13394200-13399600 Weak transcription A549 lung
43 chr20:13394200-13406800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr20:13394200-13416800 Weak transcription Esophagus oesophagus
45 chr20:13394200-13417200 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr20:13394400-13397400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr20:13394600-13397000 Weak transcription Adipose Nuclei Adipose
48 chr20:13394600-13397400 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr20:13394600-13397400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr20:13395000-13397000 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015