Variant report

Variant rs6042084
Chromosome Location chr20:13398367-13398368
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13364400-13415400 Weak transcription Right Ventricle heart
2 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13369000-13411200 Strong transcription Dnd41 blood
4 chr20:13371400-13413600 Weak transcription Ovary ovary
5 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
6 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
7 chr20:13374600-13399400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr20:13374600-13405800 Weak transcription Fetal Stomach stomach
9 chr20:13379000-13410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr20:13379200-13463000 Weak transcription HSMM muscle
11 chr20:13390800-13403000 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr20:13391200-13403400 Weak transcription Fetal Kidney kidney
13 chr20:13392600-13421400 Weak transcription Psoas Muscle Psoas
14 chr20:13392800-13415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr20:13393800-13411000 Weak transcription Pancreas Pancrea
16 chr20:13393800-13416800 Weak transcription Rectal Smooth Muscle rectum
17 chr20:13394000-13403000 Weak transcription HMEC breast
18 chr20:13394000-13415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr20:13394200-13399600 Weak transcription A549 lung
20 chr20:13394200-13406800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr20:13394200-13416800 Weak transcription Esophagus oesophagus
22 chr20:13394200-13417200 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr20:13395000-13399800 Weak transcription Hela-S3 cervix
24 chr20:13395000-13415000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr20:13395400-13399400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr20:13395400-13411000 Weak transcription Spleen Spleen
27 chr20:13395600-13416800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr20:13395600-13477800 Weak transcription Gastric stomach
29 chr20:13396000-13398600 Enhancers iPS-18 Cell Line embryonic stem cell
30 chr20:13396000-13410600 Weak transcription GM12878-XiMat blood
31 chr20:13396000-13415000 Weak transcription Brain Hippocampus Middle brain
32 chr20:13396000-13417000 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr20:13396200-13398400 Enhancers HUES48 Cell Line embryonic stem cell
34 chr20:13396200-13398400 Enhancers iPS-15b Cell Line embryonic stem cell
35 chr20:13396200-13398600 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr20:13396600-13399000 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr20:13396800-13399200 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr20:13397200-13398400 Enhancers Colon Smooth Muscle Colon
39 chr20:13397400-13398600 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr20:13397400-13398600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr20:13397400-13421200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr20:13397600-13398600 Enhancers HUES6 Cell Line embryonic stem cell
43 chr20:13397600-13398600 Enhancers HUES64 Cell Line embryonic stem cell
44 chr20:13397600-13410600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr20:13397800-13405400 Weak transcription Fetal Lung lung
46 chr20:13397800-13414400 Weak transcription Duodenum Mucosa Duodenum
47 chr20:13397800-13415000 Weak transcription Adipose Nuclei Adipose
48 chr20:13398000-13398400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
49 chr20:13398000-13398400 Weak transcription Placenta Placenta
50 chr20:13398000-13400600 Weak transcription Fetal Intestine Large intestine

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