The 2.0 version of rSNPBase

Variant report

Variant rs6033689
Chromosome Location chr20:13368090-13368091
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13360200-13368200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr20:13361800-13369400 Weak transcription Stomach Smooth Muscle stomach
3 chr20:13362400-13368200 Weak transcription Primary B cells from cord blood blood
4 chr20:13362400-13370600 Weak transcription HepG2 liver
5 chr20:13362600-13374000 Weak transcription Fetal Lung lung
6 chr20:13362600-13376800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr20:13362800-13368200 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr20:13362800-13368400 Weak transcription A549 lung
9 chr20:13362800-13368400 Weak transcription NHEK skin
10 chr20:13362800-13380600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr20:13363200-13377400 Weak transcription Fetal Brain Female brain
12 chr20:13363400-13373200 Weak transcription Fetal Muscle Trunk muscle
13 chr20:13363600-13375800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr20:13363600-13375800 Weak transcription HSMMtube muscle
15 chr20:13363800-13368800 Weak transcription Fetal Kidney kidney
16 chr20:13363800-13373400 Weak transcription Liver Liver
17 chr20:13363800-13376200 Weak transcription Fetal Muscle Leg muscle
18 chr20:13364000-13368200 Weak transcription HUES6 Cell Line embryonic stem cell
19 chr20:13364000-13377400 Weak transcription Brain Angular Gyrus brain
20 chr20:13364200-13368400 Weak transcription HMEC breast
21 chr20:13364400-13368600 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr20:13364400-13370800 Weak transcription Fetal Intestine Small intestine
23 chr20:13364400-13371000 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr20:13364400-13376400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr20:13364400-13415400 Weak transcription Right Ventricle heart
26 chr20:13364600-13368200 Weak transcription Primary hematopoietic stem cells blood
27 chr20:13364600-13368200 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr20:13364600-13368600 Strong transcription Dnd41 blood
29 chr20:13364600-13371800 Strong transcription Primary T cells from cord blood blood
30 chr20:13364600-13374200 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr20:13364600-13379000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr20:13364800-13368400 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr20:13364800-13375400 Weak transcription Colonic Mucosa Colon
35 chr20:13364800-13377600 Weak transcription Rectal Smooth Muscle rectum
36 chr20:13365400-13368400 Weak transcription GM12878-XiMat blood
37 chr20:13365400-13373000 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr20:13365400-13375800 Weak transcription HSMM muscle
39 chr20:13365600-13368200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr20:13365600-13369400 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr20:13365600-13370400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr20:13365600-13376000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr20:13365800-13368600 Strong transcription Left Ventricle heart
44 chr20:13366000-13368800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr20:13366200-13368400 Weak transcription Fetal Stomach stomach
46 chr20:13366200-13368400 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr20:13366200-13370800 Weak transcription Lung lung
48 chr20:13366200-13373600 Weak transcription Brain Hippocampus Middle brain
49 chr20:13366200-13373800 Weak transcription Esophagus oesophagus
50 chr20:13366600-13368200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015