Variant report

Variant	rs12480493
Chromosome Location	chr20:13345788-13345789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13345711..13348260-chr20:13352003..13353913,2	MCF-7	breast:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1024208	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1028849	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12329620	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12479480	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12479483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12479520	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12479594	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12479746	1.00[EUR][1000 genomes]
rs12479849	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480101	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480266	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12480276	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12480277	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12480285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480426	1.00[EUR][1000 genomes]
rs12480457	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480587	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481107	1.00[EUR][1000 genomes]
rs12481227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2008702	1.00[ASN][1000 genomes]
rs2038437	1.00[ASN][1000 genomes]
rs2145139	1.00[ASN][1000 genomes]
rs2145140	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2327755	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34573439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34988299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57675086	1.00[ASN][1000 genomes]
rs57873080	1.00[ASN][1000 genomes]
rs58129464	1.00[ASN][1000 genomes]
rs59051161	1.00[ASN][1000 genomes]
rs59299264	1.00[ASN][1000 genomes]
rs59388287	1.00[ASN][1000 genomes]
rs6033689	1.00[ASN][1000 genomes]
rs6033690	1.00[ASN][1000 genomes]
rs6033693	1.00[ASN][1000 genomes]
rs6033694	1.00[JPT][hapmap]
rs6033695	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6033699	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6033702	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6033703	1.00[ASN][1000 genomes]
rs6033704	1.00[ASN][1000 genomes]
rs6033706	1.00[ASN][1000 genomes]
rs6033708	1.00[ASN][1000 genomes]
rs6033712	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6033714	1.00[ASN][1000 genomes]
rs6033716	1.00[ASN][1000 genomes]
rs6033718	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042069	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042075	1.00[ASN][1000 genomes]
rs6042077	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042079	1.00[ASN][1000 genomes]
rs6042081	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042082	1.00[ASN][1000 genomes]
rs6042083	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042084	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042086	1.00[ASN][1000 genomes]
rs6042089	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042093	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042095	1.00[ASN][1000 genomes]
rs6042101	1.00[ASN][1000 genomes]
rs6042107	1.00[ASN][1000 genomes]
rs6042108	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042111	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042113	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042116	1.00[ASN][1000 genomes]
rs6042120	1.00[ASN][1000 genomes]
rs6042121	1.00[ASN][1000 genomes]
rs6042130	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042136	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042142	1.00[JPT][hapmap]
rs6042154	1.00[JPT][hapmap]
rs6042212	1.00[JPT][hapmap]
rs6105082	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105083	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105088	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105089	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105092	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105093	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105094	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105097	1.00[ASN][1000 genomes]
rs6105108	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105109	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6105111	0.83[EUR][1000 genomes]
rs6109849	1.00[ASN][1000 genomes]
rs6109859	1.00[ASN][1000 genomes]
rs6109863	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109866	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109868	1.00[ASN][1000 genomes]
rs6109869	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109870	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109871	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109872	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109873	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109883	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109886	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109888	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109889	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109895	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109896	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109900	1.00[ASN][1000 genomes]
rs6109901	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109902	1.00[ASN][1000 genomes]
rs6109904	1.00[JPT][hapmap]
rs61151551	1.00[ASN][1000 genomes]
rs61612076	1.00[ASN][1000 genomes]
rs7274078	1.00[JPT][hapmap]
rs73264980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7348566	1.00[ASN][1000 genomes]
rs73901179	1.00[ASN][1000 genomes]
rs8119260	1.00[ASN][1000 genomes]
rs927122	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9653627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13310200-13350000	Weak transcription	Pancreas	Pancrea
2	chr20:13325600-13354000	Weak transcription	Dnd41	blood
3	chr20:13336400-13347400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr20:13344000-13348800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr20:13344400-13348800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr20:13344600-13352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr20:13344800-13351600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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