The 2.0 version of rSNPBase

Variant report

Variant rs6042120
Chromosome Location chr20:13434664-13434665
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13379200-13463000 Weak transcription HSMM muscle
2 chr20:13395600-13477800 Weak transcription Gastric stomach
3 chr20:13403800-13435000 Weak transcription HMEC breast
4 chr20:13404400-13434800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr20:13404400-13434800 Weak transcription NHEK skin
6 chr20:13411400-13435000 Weak transcription Lung lung
7 chr20:13415400-13435000 Weak transcription Placenta Placenta
8 chr20:13416000-13438200 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr20:13416200-13435000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr20:13416200-13436600 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr20:13420800-13444400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr20:13421800-13436600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr20:13421800-13450000 Weak transcription Fetal Lung lung
14 chr20:13422000-13460400 Weak transcription Primary B cells from cord blood blood
15 chr20:13422000-13461200 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr20:13422200-13435000 Weak transcription Aorta Aorta
17 chr20:13422400-13435200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr20:13424600-13435000 Weak transcription Fetal Muscle Leg muscle
19 chr20:13428400-13448800 Weak transcription Thymus Thymus
20 chr20:13429800-13437000 Strong transcription Dnd41 blood
21 chr20:13430000-13467800 Weak transcription Ovary ovary
22 chr20:13430200-13467800 Weak transcription Pancreas Pancrea
23 chr20:13430400-13442200 Weak transcription Stomach Smooth Muscle stomach
24 chr20:13430600-13435400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr20:13430600-13436000 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr20:13431400-13436000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr20:13431600-13435200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr20:13431600-13445000 Weak transcription Adipose Nuclei Adipose
29 chr20:13431800-13435000 Weak transcription Primary T cells fromperipheralblood blood
30 chr20:13432000-13435400 Strong transcription Primary T cells from cord blood blood
31 chr20:13432200-13438400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr20:13432400-13448800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr20:13432600-13435200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr20:13432600-13437400 Enhancers Liver Liver
35 chr20:13433400-13435600 Strong transcription Primary B cells from peripheral blood blood
36 chr20:13433600-13434800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr20:13433800-13452200 Weak transcription Fetal Intestine Small intestine
38 chr20:13434000-13444800 Weak transcription Primary hematopoietic stem cells blood
39 chr20:13434000-13450000 Weak transcription Fetal Intestine Large intestine
40 chr20:13434400-13436600 Weak transcription HepG2 liver
41 chr20:13434600-13435400 Strong transcription Fetal Thymus thymus
42 chr20:13434600-13436800 Enhancers Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015