Variant report

Variant rs6109873
Chromosome Location chr20:13397597-13397598
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13364400-13415400 Weak transcription Right Ventricle heart
2 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr20:13369000-13411200 Strong transcription Dnd41 blood
4 chr20:13371400-13413600 Weak transcription Ovary ovary
5 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
6 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
7 chr20:13374600-13399400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr20:13374600-13405800 Weak transcription Fetal Stomach stomach
9 chr20:13379000-13410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr20:13379200-13463000 Weak transcription HSMM muscle
11 chr20:13380800-13397600 Weak transcription Fetal Lung lung
12 chr20:13387800-13397600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr20:13390800-13403000 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr20:13391200-13403400 Weak transcription Fetal Kidney kidney
15 chr20:13392600-13421400 Weak transcription Psoas Muscle Psoas
16 chr20:13392800-13415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr20:13393800-13411000 Weak transcription Pancreas Pancrea
18 chr20:13393800-13416800 Weak transcription Rectal Smooth Muscle rectum
19 chr20:13394000-13397800 Weak transcription Placenta Placenta
20 chr20:13394000-13398000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr20:13394000-13403000 Weak transcription HMEC breast
22 chr20:13394000-13415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr20:13394200-13399600 Weak transcription A549 lung
24 chr20:13394200-13406800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr20:13394200-13416800 Weak transcription Esophagus oesophagus
26 chr20:13394200-13417200 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr20:13395000-13399800 Weak transcription Hela-S3 cervix
28 chr20:13395000-13415000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr20:13395400-13399400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr20:13395400-13411000 Weak transcription Spleen Spleen
31 chr20:13395600-13416800 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr20:13395600-13477800 Weak transcription Gastric stomach
33 chr20:13396000-13398600 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr20:13396000-13410600 Weak transcription GM12878-XiMat blood
35 chr20:13396000-13415000 Weak transcription Brain Hippocampus Middle brain
36 chr20:13396000-13417000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr20:13396200-13398000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
38 chr20:13396200-13398400 Enhancers HUES48 Cell Line embryonic stem cell
39 chr20:13396200-13398400 Enhancers iPS-15b Cell Line embryonic stem cell
40 chr20:13396200-13398600 Strong transcription Primary hematopoietic stem cells short term culture blood
41 chr20:13396400-13398000 Strong transcription Fetal Intestine Large intestine
42 chr20:13396400-13398200 Strong transcription Primary T helper cells fromperipheralblood blood
43 chr20:13396600-13397600 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr20:13396600-13397600 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr20:13396600-13399000 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr20:13396800-13399200 Weak transcription Monocytes-CD14+_RO01746 blood
47 chr20:13397000-13397800 Strong transcription Adipose Nuclei Adipose
48 chr20:13397000-13397800 Strong transcription Duodenum Mucosa Duodenum
49 chr20:13397000-13398000 Strong transcription Primary B cells from cord blood blood
50 chr20:13397000-13398200 Strong transcription Fetal Muscle Leg muscle

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