The 2.0 version of rSNPBase

Variant report

Variant rs12480457
Chromosome Location chr20:13373036-13373037
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13362600-13374000 Weak transcription Fetal Lung lung
2 chr20:13362600-13376800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr20:13362800-13380600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr20:13363200-13377400 Weak transcription Fetal Brain Female brain
5 chr20:13363400-13373200 Weak transcription Fetal Muscle Trunk muscle
6 chr20:13363600-13375800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr20:13363600-13375800 Weak transcription HSMMtube muscle
8 chr20:13363800-13373400 Weak transcription Liver Liver
9 chr20:13363800-13376200 Weak transcription Fetal Muscle Leg muscle
10 chr20:13364000-13377400 Weak transcription Brain Angular Gyrus brain
11 chr20:13364400-13376400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr20:13364400-13415400 Weak transcription Right Ventricle heart
13 chr20:13364600-13374200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr20:13364600-13379000 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr20:13364800-13375400 Weak transcription Colonic Mucosa Colon
17 chr20:13364800-13377600 Weak transcription Rectal Smooth Muscle rectum
18 chr20:13365400-13375800 Weak transcription HSMM muscle
19 chr20:13365600-13376000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr20:13366200-13373600 Weak transcription Brain Hippocampus Middle brain
21 chr20:13366200-13373800 Weak transcription Esophagus oesophagus
22 chr20:13366600-13375600 Weak transcription Fetal Intestine Large intestine
23 chr20:13366800-13375800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr20:13367200-13378400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr20:13367600-13373800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr20:13368000-13376600 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr20:13368600-13376000 Weak transcription Duodenum Mucosa Duodenum
28 chr20:13368600-13376400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr20:13368600-13378400 Weak transcription GM12878-XiMat blood
30 chr20:13368600-13382400 Weak transcription HMEC breast
31 chr20:13368600-13397400 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr20:13368800-13373200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr20:13368800-13373600 Weak transcription Fetal Stomach stomach
34 chr20:13368800-13373600 Weak transcription Pancreas Pancrea
35 chr20:13368800-13375400 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr20:13368800-13376400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr20:13368800-13392200 Weak transcription Aorta Aorta
38 chr20:13369000-13375200 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr20:13369000-13411200 Strong transcription Dnd41 blood
40 chr20:13369400-13373400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr20:13369400-13377400 Weak transcription Colon Smooth Muscle Colon
42 chr20:13369400-13377600 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr20:13369400-13380200 Weak transcription Psoas Muscle Psoas
44 chr20:13369400-13397000 Weak transcription Primary B cells from cord blood blood
45 chr20:13369400-13397200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr20:13369600-13373600 Weak transcription Primary hematopoietic stem cells blood
47 chr20:13369600-13397000 Weak transcription Fetal Thymus thymus
48 chr20:13369800-13376000 Weak transcription Primary T cells fromperipheralblood blood
49 chr20:13370000-13375800 Weak transcription Stomach Smooth Muscle stomach
50 chr20:13370000-13378400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015