Variant report

Variant	rs6033802
Chromosome Location	chr20:13661692-13661693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1024208	1.00[ASN][1000 genomes]
rs1028849	1.00[ASN][1000 genomes]
rs12479594	1.00[ASN][1000 genomes]
rs12479707	0.86[EUR][1000 genomes]
rs12479746	1.00[ASN][1000 genomes]
rs12480131	1.00[ASN][1000 genomes]
rs12480277	1.00[ASN][1000 genomes]
rs12480426	1.00[ASN][1000 genomes]
rs12481107	1.00[ASN][1000 genomes]
rs12481490	0.83[EUR][1000 genomes]
rs2180570	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876358	0.86[EUR][1000 genomes]
rs6033782	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033805	0.86[EUR][1000 genomes]
rs6033806	0.83[EUR][1000 genomes]
rs6042142	1.00[ASN][1000 genomes]
rs6042143	1.00[ASN][1000 genomes]
rs6042152	1.00[ASN][1000 genomes]
rs6042154	1.00[ASN][1000 genomes]
rs6042234	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042241	1.00[ASN][1000 genomes]
rs6042242	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042248	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042249	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042274	1.00[ASN][1000 genomes]
rs6042275	1.00[ASN][1000 genomes]
rs6042284	1.00[ASN][1000 genomes]
rs6042307	0.83[EUR][1000 genomes]
rs60686384	1.00[ASN][1000 genomes]
rs6079117	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105111	1.00[ASN][1000 genomes]
rs6105146	1.00[ASN][1000 genomes]
rs6109904	1.00[ASN][1000 genomes]
rs6109972	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6109985	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61518689	1.00[ASN][1000 genomes]
rs7274078	1.00[ASN][1000 genomes]
rs73254604	1.00[ASN][1000 genomes]
rs73254663	0.86[EUR][1000 genomes]
rs73270770	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73899330	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1061323	chr20:13551004-13746346	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv531478	chr20:13580524-13814797	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13658600-13662000	Enhancers	Dnd41	blood
2	chr20:13659800-13667200	Enhancers	Fetal Thymus	thymus
3	chr20:13661000-13662800	Enhancers	Thymus	Thymus

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