Variant report

Variant	rs6033782
Chromosome Location	chr20:13611729-13611730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13606363..13608023-chr20:13611661..13613306,2	K562	blood:
2	chr20:13604911..13607863-chr20:13611443..13613306,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1024208	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1028849	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10439586	0.87[AFR][1000 genomes]
rs12329620	1.00[CEU][hapmap]
rs12479594	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12479746	1.00[ASN][1000 genomes]
rs12480131	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480277	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12480426	1.00[ASN][1000 genomes]
rs12480587	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12481107	1.00[ASN][1000 genomes]
rs12481490	1.00[EUR][1000 genomes]
rs13433337	1.00[AMR][1000 genomes]
rs2180570	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033712	1.00[JPT][hapmap]
rs6033718	1.00[JPT][hapmap]
rs6033774	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6033784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6033791	1.00[AMR][1000 genomes]
rs6033797	1.00[AMR][1000 genomes]
rs6033800	1.00[AMR][1000 genomes]
rs6033802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033806	1.00[EUR][1000 genomes]
rs6042093	1.00[JPT][hapmap]
rs6042108	1.00[JPT][hapmap]
rs6042111	1.00[JPT][hapmap]
rs6042113	1.00[JPT][hapmap]
rs6042130	1.00[JPT][hapmap]
rs6042136	1.00[JPT][hapmap]
rs6042142	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042143	1.00[ASN][1000 genomes]
rs6042152	1.00[ASN][1000 genomes]
rs6042154	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6042212	1.00[JPT][hapmap]
rs6042233	0.98[AFR][1000 genomes]
rs6042234	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042237	0.98[AFR][1000 genomes]
rs6042241	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6042242	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042243	0.93[AFR][1000 genomes]
rs6042246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042247	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042265	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042267	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042274	1.00[ASN][1000 genomes]
rs6042275	1.00[ASN][1000 genomes]
rs6042284	1.00[ASN][1000 genomes]
rs6042286	1.00[AMR][1000 genomes]
rs6042298	1.00[AMR][1000 genomes]
rs6042303	1.00[AMR][1000 genomes]
rs6042307	1.00[EUR][1000 genomes]
rs60686384	1.00[ASN][1000 genomes]
rs6079117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105108	1.00[JPT][hapmap]
rs6105109	1.00[JPT][hapmap]
rs6105111	1.00[ASN][1000 genomes]
rs6105145	1.00[AMR][1000 genomes]
rs6105146	1.00[ASN][1000 genomes]
rs6109883	1.00[JPT][hapmap]
rs6109886	1.00[JPT][hapmap]
rs6109888	1.00[JPT][hapmap]
rs6109889	1.00[JPT][hapmap]
rs6109895	1.00[JPT][hapmap]
rs6109896	1.00[JPT][hapmap]
rs6109901	1.00[JPT][hapmap]
rs6109904	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6109967	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6109968	0.98[AFR][1000 genomes]
rs6109972	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6109973	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61518689	1.00[ASN][1000 genomes]
rs7274078	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73254604	1.00[ASN][1000 genomes]
rs73268992	0.83[AFR][1000 genomes]
rs73270770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73899330	1.00[ASN][1000 genomes]
rs9653627	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1061323	chr20:13551004-13746346	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv531478	chr20:13580524-13814797	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13526800-13613800	Weak transcription	Hela-S3	cervix
2	chr20:13556200-13618800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr20:13563800-13619000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:13564000-13612400	Weak transcription	Pancreas	Pancrea
5	chr20:13567200-13618600	Weak transcription	Adipose Nuclei	Adipose
6	chr20:13584000-13617800	Weak transcription	Aorta	Aorta
7	chr20:13587000-13618000	Weak transcription	Fetal Brain Male	brain
8	chr20:13588000-13618600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr20:13590800-13617800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:13591200-13619000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr20:13592200-13617800	Weak transcription	Small Intestine	intestine
12	chr20:13594400-13618600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr20:13595400-13618200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr20:13595600-13618200	Weak transcription	Colon Smooth Muscle	Colon
15	chr20:13596200-13618200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr20:13596600-13618000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr20:13597400-13618800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr20:13598200-13618800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr20:13599000-13618600	Weak transcription	Fetal Intestine Small	intestine
20	chr20:13601000-13618400	Weak transcription	NHLF	lung
21	chr20:13601600-13618200	Weak transcription	Brain Germinal Matrix	brain
22	chr20:13602000-13618200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr20:13603200-13618000	Weak transcription	Fetal Kidney	kidney
24	chr20:13603400-13613600	Genic enhancers	Dnd41	blood
25	chr20:13603400-13618000	Weak transcription	A549	lung
26	chr20:13603600-13618600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr20:13605800-13618800	Weak transcription	Colonic Mucosa	Colon
28	chr20:13605800-13619000	Weak transcription	Spleen	Spleen
29	chr20:13606400-13612000	Weak transcription	Ovary	ovary
30	chr20:13606400-13618200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr20:13606600-13612400	Weak transcription	Lung	lung
32	chr20:13606800-13618200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr20:13607000-13618800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr20:13607400-13618800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr20:13607600-13618800	Weak transcription	Placenta	Placenta
36	chr20:13607800-13618400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr20:13608200-13618400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr20:13608800-13612000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr20:13608800-13612000	Weak transcription	Osteobl	bone
40	chr20:13608800-13613800	Weak transcription	Gastric	stomach
41	chr20:13608800-13618400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr20:13608800-13618600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr20:13608800-13618800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr20:13608800-13618800	Weak transcription	HSMM	muscle
45	chr20:13609000-13613400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr20:13609000-13618000	Weak transcription	NHEK	skin
47	chr20:13609000-13618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr20:13609000-13618800	Weak transcription	HSMMtube	muscle
49	chr20:13609200-13617800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr20:13609200-13618000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links