Variant report

Variant	rs35890745
Chromosome Location	chr10:96987941-96987942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96983667..96985290-chr10:96987249..96989514,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDLIM1-1	chr10:96986469-96988183	NONHSAT015753

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3740507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96944200-96990400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:96956200-96990400	Weak transcription	Aorta	Aorta
3	chr10:96960200-96988800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:96961800-96989400	Weak transcription	Primary T cells from cord blood	blood
5	chr10:96962000-96990000	Weak transcription	Fetal Intestine Small	intestine
6	chr10:96965000-96988000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:96965400-96989400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:96969200-96990200	Weak transcription	Left Ventricle	heart
9	chr10:96969400-96990400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:96970200-96992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:96971800-96989400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:96972200-96988000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:96972600-96989600	Weak transcription	Fetal Thymus	thymus
14	chr10:96975400-96990200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:96975600-96990000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:96976000-96990000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:96976400-96989600	Weak transcription	GM12878-XiMat	blood
18	chr10:96978400-96988000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:96980200-96988000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:96980200-96989400	Weak transcription	Fetal Heart	heart
21	chr10:96981400-96988000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:96981600-96988000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:96981600-96988400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:96981800-96988000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:96981800-96988000	Weak transcription	HSMM	muscle
26	chr10:96981800-96988000	Weak transcription	NHLF	lung
27	chr10:96981800-96989200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:96982400-96990200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:96984200-96988200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:96984600-96990400	Weak transcription	Esophagus	oesophagus
31	chr10:96985000-96988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:96985200-96989400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:96986400-96988000	Weak transcription	Liver	Liver
34	chr10:96986400-96990400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:96986800-96988600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:96987000-96990200	Weak transcription	Right Ventricle	heart
37	chr10:96987200-96988000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:96987200-96989200	Enhancers	A549	lung
39	chr10:96987400-96988000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:96987400-96988600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:96987400-96990800	Enhancers	NHDF-Ad	bronchial
42	chr10:96987600-96988800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:96987800-96988000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:96987800-96988400	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr10:96987800-96988600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:96987800-96989000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:96987800-96989200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:96987800-96989200	Enhancers	NH-A	brain
49	chr10:96987800-96989200	Enhancers	NHEK	skin
50	chr10:96987800-96989400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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