Variant report

Variant	rs3740507
Chromosome Location	chr10:96995529-96995530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:96995526-96995694	K562	blood:	n/a	n/a
2	POLR2A	chr10:96995314-96996890	GM12892	blood:	n/a	n/a
3	GATA3	chr10:96995518-96996758	SK-N-SH	brain:	n/a	chr10:96995983-96995992 chr10:96995731-96995741
4	POLR2A	chr10:96995520-96996885	GM12891	blood:	n/a	n/a
5	POLR2A	chr10:96995480-96996709	K562	blood:	n/a	n/a
6	POLR2A	chr10:96995430-96996827	GM12891	blood:	n/a	n/a
7	FOSL1	chr10:96995525-96996783	HCT-116	colon:	n/a	chr10:96995982-96995990 chr10:96995980-96995992 chr10:96996311-96996323 chr10:96995924-96995933 chr10:96995872-96995881 chr10:96995924-96995931 chr10:96995924-96995932
8	JUND	chr10:96995446-96996723	SK-N-SH	brain:	n/a	chr10:96995982-96995990 chr10:96995980-96995992 chr10:96996311-96996323 chr10:96995924-96995933 chr10:96995872-96995881 chr10:96995922-96995933 chr10:96995924-96995931 chr10:96995924-96995932
9	POLR2A	chr10:96995440-96996805	GM12892	blood:	n/a	n/a
10	MTA3	chr10:96995454-96996831	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:96995431-96996803	GM12892	blood:	n/a	n/a
12	JUND	chr10:96995519-96996579	HCT-116	colon:	n/a	chr10:96995982-96995990 chr10:96995980-96995992 chr10:96996311-96996323 chr10:96995924-96995933 chr10:96995872-96995881 chr10:96995922-96995933 chr10:96995924-96995931 chr10:96995924-96995932
13	JUND	chr10:96995528-96996712	SK-N-SH	brain:	n/a	chr10:96995982-96995990 chr10:96995980-96995992 chr10:96996311-96996323 chr10:96995924-96995933 chr10:96995872-96995881 chr10:96995922-96995933 chr10:96995924-96995931 chr10:96995924-96995932
14	FOSL2	chr10:96995509-96996553	A549	lung:	n/a	chr10:96995982-96995990 chr10:96995980-96995992 chr10:96996311-96996323 chr10:96995924-96995933 chr10:96995872-96995881 chr10:96995924-96995931 chr10:96995924-96995932
15	POLR2A	chr10:96995517-96995952	GM12891	blood:	n/a	n/a
16	POLR2A	chr10:96994643-96996769	GM12891	blood:	n/a	n/a
17	FOXM1	chr10:96995417-96996644	GM12878	blood:	n/a	n/a
18	MTA3	chr10:96995511-96996524	GM12878	blood:	n/a	n/a
19	CBX3	chr10:96995525-96996226	HCT-116	colon:	n/a	n/a
20	PML	chr10:96995518-96996623	GM12878	blood:	n/a	chr10:96995925-96995934

Variant related genes	Relation type
ENSG00000234026	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35890745	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96990000-96995800	Weak transcription	HepG2	liver
2	chr10:96990800-96997400	Weak transcription	Stomach Mucosa	stomach
3	chr10:96990800-97005200	Weak transcription	Psoas Muscle	Psoas
4	chr10:96991000-96995600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:96991000-96995600	Weak transcription	HUVEC	blood vessel
6	chr10:96991000-96995800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:96991000-96996000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:96991000-96996200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:96991000-96996400	Weak transcription	Right Ventricle	heart
10	chr10:96991000-96997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:96991000-96997400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:96991000-96997600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:96991000-96999800	Weak transcription	Fetal Lung	lung
14	chr10:96991000-97001200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:96991000-97001600	Weak transcription	Thymus	Thymus
16	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:96991000-97006600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:96991000-97006600	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:96991000-97006600	Weak transcription	Right Atrium	heart
21	chr10:96991000-97007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:96991200-96996400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:96991200-97000000	Weak transcription	Fetal Kidney	kidney
26	chr10:96991200-97000200	Weak transcription	Fetal Thymus	thymus
27	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:96991600-96996200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:96991600-96997400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:96991600-97001000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:96992000-96995600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:96992000-97005000	Strong transcription	Duodenum Mucosa	Duodenum
33	chr10:96992000-97005800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:96992200-96997400	Weak transcription	Small Intestine	intestine
35	chr10:96992200-97009000	Strong transcription	Liver	Liver
36	chr10:96992400-96995600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:96992400-96995600	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:96992400-96996000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr10:96992400-96996200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:96992400-96996200	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:96992400-96998600	Strong transcription	Fetal Stomach	stomach
42	chr10:96992400-96998800	Strong transcription	Left Ventricle	heart
43	chr10:96992400-96999000	Strong transcription	Adipose Nuclei	Adipose
44	chr10:96992400-97000000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:96992400-97006200	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr10:96992600-96998600	Strong transcription	Lung	lung
47	chr10:96992600-97004000	Strong transcription	Fetal Intestine Large	intestine
48	chr10:96993000-96996600	Enhancers	NHDF-Ad	bronchial
49	chr10:96993000-96996800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:96993200-96998800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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