Variant report

Variant	rs35892512
Chromosome Location	chr1:213076639-213076640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1027422	1.00[ASN][1000 genomes]
rs12750027	1.00[ASN][1000 genomes]
rs17677416	1.00[ASN][1000 genomes]
rs34799814	1.00[ASN][1000 genomes]
rs59666456	1.00[ASN][1000 genomes]
rs9660930	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1007129	chr1:213037244-213083261	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213072200-213077000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr1:213073200-213079200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr1:213073200-213079400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr1:213073200-213079800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr1:213073600-213079200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr1:213073800-213079200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:213073800-213079200	Weak transcription	Right Atrium	heart
8	chr1:213073800-213089000	Weak transcription	Pancreas	Pancrea
9	chr1:213075200-213079000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr1:213075800-213076800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:213076000-213076800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:213076400-213078200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:213076600-213077000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links