Variant report

Variant	rs35900382
Chromosome Location	chr1:47521615-47521616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10890446	0.81[EUR][1000 genomes]
rs10890447	0.81[EUR][1000 genomes]
rs10890449	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10890452	0.84[AMR][1000 genomes]
rs10890453	0.80[AMR][1000 genomes]
rs10890454	0.80[AMR][1000 genomes]
rs10890455	0.80[AMR][1000 genomes]
rs1117514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211421	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11211423	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211435	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211439	0.80[AMR][1000 genomes]
rs11211442	0.84[AMR][1000 genomes]
rs11211444	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12022635	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12564635	0.80[AMR][1000 genomes]
rs12567857	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12568064	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12736235	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1393659	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1393667	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2134471	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2202219	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2405580	0.81[EUR][1000 genomes]
rs4375314	0.80[AMR][1000 genomes]
rs4492665	0.82[AMR][1000 genomes]
rs4598535	0.83[AMR][1000 genomes]
rs4926773	0.80[AMR][1000 genomes]
rs6669621	0.80[AMR][1000 genomes]
rs6683137	0.80[AMR][1000 genomes]
rs9326153	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9699932	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9701154	0.81[AMR][1000 genomes]
rs9701886	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9701899	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9728169	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9729662	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9793711	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv871717	chr1:47449486-47524264	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv461428	chr1:47487585-47524264	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv546167	chr1:47487585-47524264	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47515400-47524000	Weak transcription	Aorta	Aorta
2	chr1:47516000-47523600	Weak transcription	Left Ventricle	heart

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