Variant report

Variant	rs12567857
Chromosome Location	chr14:69885120-69885121
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10890446	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10890447	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10890449	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10890452	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10890453	0.84[AMR][1000 genomes]
rs10890454	0.84[AMR][1000 genomes]
rs10890455	0.84[AMR][1000 genomes]
rs1117514	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211421	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211423	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11211435	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211439	0.84[AMR][1000 genomes]
rs11211442	0.86[AMR][1000 genomes]
rs11211444	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12022635	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12564635	0.84[AMR][1000 genomes]
rs12568064	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12732488	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12736235	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1393659	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1393667	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2134471	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2202219	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2405580	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35900382	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4375314	0.84[AMR][1000 genomes]
rs4492665	0.82[AMR][1000 genomes]
rs4598535	0.83[AMR][1000 genomes]
rs4926773	0.84[AMR][1000 genomes]
rs6669621	0.84[AMR][1000 genomes]
rs6683137	0.84[AMR][1000 genomes]
rs9326153	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9659815	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9699932	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9701154	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9701868	0.81[AMR][1000 genomes]
rs9701886	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9701899	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9728169	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9729662	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9793471	0.82[AMR][1000 genomes]
rs9793711	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9793716	0.85[AMR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69866200-69888000	Weak transcription	Aorta	Aorta
2	chr14:69868000-69890600	Weak transcription	Colonic Mucosa	Colon
3	chr14:69868000-69890800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:69868000-69890800	Weak transcription	Fetal Lung	lung
5	chr14:69868000-69891000	Weak transcription	Brain Anterior Caudate	brain
6	chr14:69868000-69892200	Weak transcription	Lung	lung
7	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
8	chr14:69868200-69888400	Weak transcription	Fetal Intestine Large	intestine
9	chr14:69868200-69890000	Weak transcription	A549	lung
10	chr14:69868200-69890200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:69868200-69890400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:69868200-69890600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:69868200-69890600	Weak transcription	HSMM	muscle
14	chr14:69868200-69890800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:69868200-69890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:69868200-69891400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:69868400-69888400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:69868800-69888000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:69868800-69890800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:69868800-69890800	Weak transcription	NHEK	skin
21	chr14:69869000-69890400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:69869000-69891000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:69869200-69890600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:69869400-69890400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:69869400-69890800	Weak transcription	Primary T cells from cord blood	blood
26	chr14:69869400-69890800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:69869400-69890800	Weak transcription	K562	blood
28	chr14:69869600-69891800	Weak transcription	Hela-S3	cervix
29	chr14:69870200-69890000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:69871000-69890200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:69871000-69892800	Weak transcription	Left Ventricle	heart
32	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
33	chr14:69871600-69888000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr14:69872000-69888000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:69872000-69890400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:69873200-69890800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:69873200-69892600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:69875600-69890800	Weak transcription	Primary B cells from cord blood	blood
39	chr14:69875800-69890600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:69876200-69892800	Weak transcription	Gastric	stomach
41	chr14:69876400-69888200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:69877200-69890600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:69880600-69890800	Weak transcription	Fetal Thymus	thymus
44	chr14:69882400-69890200	Weak transcription	GM12878-XiMat	blood
45	chr14:69883800-69891800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:69884800-69890600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:69884800-69890800	Weak transcription	Liver	Liver

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