Variant report

Variant	rs9659815
Chromosome Location	chr1:47534636-47534637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10890446	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890447	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890449	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10890452	0.83[AMR][1000 genomes]
rs10890453	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10890454	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10890455	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1110425	0.83[AMR][1000 genomes]
rs1117514	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211421	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211423	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211435	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211439	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211442	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12022635	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404496	0.87[ASN][1000 genomes]
rs12564635	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12567857	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12568064	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12732488	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736235	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393659	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393667	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502908	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1553391	0.83[AMR][1000 genomes]
rs2134471	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202219	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405580	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405588	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4314923	0.82[AMR][1000 genomes]
rs4375314	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4926773	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4926785	0.83[AMR][1000 genomes]
rs4926786	0.82[AMR][1000 genomes]
rs4926787	0.81[AMR][1000 genomes]
rs4926788	0.82[AMR][1000 genomes]
rs4926789	0.81[AMR][1000 genomes]
rs4926791	0.81[AMR][1000 genomes]
rs4926792	0.81[AMR][1000 genomes]
rs4926793	0.82[AMR][1000 genomes]
rs4926797	0.82[AMR][1000 genomes]
rs4926804	0.82[AMR][1000 genomes]
rs4926809	0.82[AMR][1000 genomes]
rs6669621	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6675902	0.82[AMR][1000 genomes]
rs6683137	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6690005	0.82[AMR][1000 genomes]
rs6693145	0.83[AMR][1000 genomes]
rs6701611	0.83[AMR][1000 genomes]
rs7519903	0.81[AMR][1000 genomes]
rs7540264	0.82[AMR][1000 genomes]
rs9326153	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9699932	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9701154	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9701868	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9701886	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9701899	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9728169	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9729662	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793471	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793711	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793716	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv870705	chr1:47533705-47620126	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47534400-47535000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr1:47534600-47535000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:47534600-47535000	Enhancers	Hela-S3	cervix

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