Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10495191	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1487523	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17163157	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17163177	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17163185	0.93[EUR][1000 genomes]
rs17163186	0.93[EUR][1000 genomes]
rs34151606	0.96[EUR][1000 genomes]
rs34229050	0.94[EUR][1000 genomes]
rs34513020	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34917654	0.96[EUR][1000 genomes]
rs35147531	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35241541	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35280999	0.96[EUR][1000 genomes]
rs35455442	0.95[EUR][1000 genomes]
rs35692317	0.90[EUR][1000 genomes]
rs35746652	0.96[EUR][1000 genomes]
rs35832897	0.96[EUR][1000 genomes]
rs35948365	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3748662	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3748664	0.96[EUR][1000 genomes]
rs3748666	0.96[EUR][1000 genomes]
rs4846764	0.96[EUR][1000 genomes]
rs4846765	0.95[EUR][1000 genomes]
rs61825519	0.96[EUR][1000 genomes]
rs61825520	0.96[EUR][1000 genomes]
rs61825521	0.96[EUR][1000 genomes]
rs61825522	0.94[EUR][1000 genomes]
rs66459971	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873203	chr1:222332906-222775000	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222697400-222702800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222698000-222702400	Weak transcription	NHDF-Ad	bronchial
3	chr1:222698800-222700200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:222699600-222702400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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