Variant report

Variant	rs61825522
Chromosome Location	chr1:222714451-222714452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10495191	0.95[EUR][1000 genomes]
rs11487812	0.81[ASN][1000 genomes]
rs1487523	0.95[EUR][1000 genomes]
rs17163157	0.93[EUR][1000 genomes]
rs17163175	0.80[ASN][1000 genomes]
rs17163177	0.97[EUR][1000 genomes]
rs17163185	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17163186	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17463538	0.96[ASN][1000 genomes]
rs34136100	0.81[ASN][1000 genomes]
rs34151606	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34229050	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34256442	0.80[ASN][1000 genomes]
rs34341350	0.80[ASN][1000 genomes]
rs34513020	0.95[EUR][1000 genomes]
rs34916216	0.81[ASN][1000 genomes]
rs34917654	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35147531	0.94[EUR][1000 genomes]
rs35241541	0.95[EUR][1000 genomes]
rs35280999	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35455442	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35692317	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35713066	0.81[ASN][1000 genomes]
rs35746652	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35759615	0.81[ASN][1000 genomes]
rs35832897	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35917524	0.94[EUR][1000 genomes]
rs35948365	0.95[EUR][1000 genomes]
rs3748662	0.95[EUR][1000 genomes]
rs3748664	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3748666	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3828079	0.81[ASN][1000 genomes]
rs4846369	0.80[ASN][1000 genomes]
rs4846370	0.80[ASN][1000 genomes]
rs4846373	0.80[ASN][1000 genomes]
rs4846374	0.80[ASN][1000 genomes]
rs4846375	0.80[ASN][1000 genomes]
rs4846376	0.80[ASN][1000 genomes]
rs4846377	0.80[ASN][1000 genomes]
rs4846378	0.80[ASN][1000 genomes]
rs4846381	0.80[ASN][1000 genomes]
rs4846760	0.80[ASN][1000 genomes]
rs4846761	0.80[ASN][1000 genomes]
rs4846763	0.80[ASN][1000 genomes]
rs4846764	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4846765	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61825500	0.80[ASN][1000 genomes]
rs61825501	0.80[ASN][1000 genomes]
rs61825516	0.81[ASN][1000 genomes]
rs61825519	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61825520	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61825521	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66459971	0.96[EUR][1000 genomes]
rs958933	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873203	chr1:222332906-222775000	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222710200-222718600	Weak transcription	A549	lung
2	chr1:222712200-222717000	Weak transcription	K562	blood
3	chr1:222713400-222720000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:222713600-222720000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:222713800-222715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:222714400-222718400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:222714400-222719400	Weak transcription	Osteobl	bone
8	chr1:222714400-222719600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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