Variant report

Variant	rs35918317
Chromosome Location	chr1:160654974-160654975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160648911..160653245-chr1:160654061..160656331,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLAMF7-8	chr1:160654221-160655316	NONHSAT007071

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11265508	1.00[MEX][hapmap]
rs12065420	1.00[MEX][hapmap]
rs12074019	1.00[MEX][hapmap]
rs16832208	1.00[MEX][hapmap]
rs16832317	1.00[MEX][hapmap]
rs16832484	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv437213	chr1:160652730-160681836	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160643400-160655200	Weak transcription	Colonic Mucosa	Colon
2	chr1:160644600-160655800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:160650400-160655600	Genic enhancers	Fetal Thymus	thymus
4	chr1:160650600-160656400	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr1:160650800-160655200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:160651000-160656400	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr1:160651000-160656400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:160651200-160655000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:160651200-160655800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:160651400-160656000	Genic enhancers	Primary B cells from cord blood	blood
11	chr1:160651600-160655400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:160651600-160655400	Genic enhancers	Dnd41	blood
13	chr1:160651600-160656400	Genic enhancers	Primary T cells from cord blood	blood
14	chr1:160651600-160656600	Genic enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:160652600-160655000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
16	chr1:160652600-160655400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:160652600-160656000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:160653600-160655800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:160653800-160655200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr1:160653800-160656000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr1:160654000-160655000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:160654000-160655200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:160654000-160662800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:160654200-160655200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr1:160654200-160657000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:160654200-160671000	Weak transcription	Small Intestine	intestine
27	chr1:160654400-160655200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr1:160654400-160656000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
29	chr1:160654600-160655000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:160654600-160655200	Enhancers	Spleen	Spleen
31	chr1:160654800-160655200	Genic enhancers	Thymus	Thymus
32	chr1:160654800-160655600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr1:160654800-160656200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
34	chr1:160654800-160656400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:160654800-160656400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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