Variant report

Variant	rs35923988
Chromosome Location	chr22:31654293-31654294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31642310..31646378-chr22:31653276..31655946,3	MCF-7	breast:
2	chr22:31643031..31646502-chr22:31653237..31655706,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182541	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11913573	1.00[ASN][1000 genomes]
rs11913621	1.00[ASN][1000 genomes]
rs12106594	1.00[ASN][1000 genomes]
rs35351984	1.00[ASN][1000 genomes]
rs41279977	1.00[ASN][1000 genomes]
rs5997930	1.00[ASN][1000 genomes]
rs7286320	1.00[ASN][1000 genomes]
rs7287648	1.00[ASN][1000 genomes]
rs7291131	1.00[ASN][1000 genomes]
rs7292627	1.00[ASN][1000 genomes]
rs740229	1.00[ASN][1000 genomes]
rs757871	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31644200-31665800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:31644600-31654400	Weak transcription	K562	blood
3	chr22:31644600-31658000	Weak transcription	Psoas Muscle	Psoas
4	chr22:31644600-31668600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:31644800-31654400	Weak transcription	Liver	Liver
6	chr22:31644800-31654800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr22:31645000-31654400	Weak transcription	Brain Germinal Matrix	brain
8	chr22:31645000-31668400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr22:31645000-31668600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr22:31645000-31677600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr22:31645200-31654400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr22:31645200-31654800	Weak transcription	Fetal Lung	lung
13	chr22:31645200-31667000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr22:31645400-31661800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:31645600-31654400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr22:31645600-31654600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr22:31645800-31654400	Weak transcription	NHLF	lung
18	chr22:31645800-31654600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr22:31645800-31654800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr22:31646400-31654400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr22:31646600-31655400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:31646800-31655000	Weak transcription	Aorta	Aorta
23	chr22:31647200-31654800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr22:31647200-31654800	Weak transcription	NHDF-Ad	bronchial
25	chr22:31647200-31655000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr22:31647600-31654600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr22:31647800-31654400	Weak transcription	Fetal Kidney	kidney
28	chr22:31648000-31654400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr22:31648000-31654600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr22:31650000-31655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr22:31650200-31654600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr22:31650200-31655000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr22:31650200-31666200	Strong transcription	HepG2	liver
34	chr22:31650200-31675600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr22:31650200-31679200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr22:31650400-31654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr22:31650400-31654400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr22:31650400-31654400	Weak transcription	Spleen	Spleen
39	chr22:31650400-31654800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr22:31650400-31658000	Weak transcription	Small Intestine	intestine
41	chr22:31650400-31660600	Strong transcription	Fetal Intestine Large	intestine
42	chr22:31650600-31654400	Weak transcription	Brain Substantia Nigra	brain
43	chr22:31650600-31655000	Weak transcription	Right Ventricle	heart
44	chr22:31650600-31656800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr22:31650600-31676400	Weak transcription	Hela-S3	cervix
46	chr22:31651400-31670200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr22:31651600-31654400	Weak transcription	GM12878-XiMat	blood
48	chr22:31651600-31667000	Weak transcription	Fetal Heart	heart
49	chr22:31651800-31675800	Strong transcription	HMEC	breast
50	chr22:31652800-31659800	Strong transcription	Fetal Intestine Small	intestine

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