Variant report

Variant	rs35932728
Chromosome Location	chr19:38608997-38608998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10404957	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2005055	0.84[EUR][1000 genomes]
rs2099340	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2384778	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2569412	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs332843	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs332844	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs332848	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs332849	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs332850	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs332851	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs332855	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs332856	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs332858	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs332864	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4802251	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6508765	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs705507	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8100128	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8100144	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8101826	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8109695	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8109799	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8111180	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8112798	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs855614	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs855632	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9941474	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38551200-38613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr19:38573600-38610000	Strong transcription	Fetal Intestine Large	intestine
3	chr19:38581600-38610000	Weak transcription	Psoas Muscle	Psoas
4	chr19:38587200-38613600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr19:38587400-38613400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr19:38590200-38611000	Strong transcription	Duodenum Smooth Muscle	Duodenum
7	chr19:38590400-38609800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr19:38591800-38609000	Strong transcription	Fetal Stomach	stomach
9	chr19:38591800-38642800	Weak transcription	Small Intestine	intestine
10	chr19:38596000-38610000	Strong transcription	Fetal Muscle Leg	muscle
11	chr19:38596000-38613800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:38597800-38610200	Weak transcription	HUVEC	blood vessel
13	chr19:38597800-38611800	Strong transcription	Osteobl	bone
14	chr19:38597800-38612000	Strong transcription	HSMM	muscle
15	chr19:38598000-38610200	Strong transcription	A549	lung
16	chr19:38598200-38611800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:38600600-38652800	Weak transcription	NHDF-Ad	bronchial
18	chr19:38602800-38612800	Weak transcription	Hela-S3	cervix
19	chr19:38603000-38609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr19:38603000-38609400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr19:38603000-38609800	Weak transcription	Stomach Mucosa	stomach
22	chr19:38603000-38609800	Weak transcription	NHLF	lung
23	chr19:38603000-38610000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr19:38603000-38610000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr19:38603000-38610000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr19:38603000-38610000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr19:38603000-38610000	Weak transcription	Brain Anterior Caudate	brain
28	chr19:38603000-38610000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr19:38603000-38610000	Weak transcription	Esophagus	oesophagus
30	chr19:38603000-38610000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr19:38603000-38611200	Weak transcription	Fetal Brain Male	brain
32	chr19:38603000-38625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr19:38603200-38609600	Weak transcription	Fetal Kidney	kidney
34	chr19:38603200-38610000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr19:38603200-38610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr19:38603200-38610000	Weak transcription	Brain Substantia Nigra	brain
37	chr19:38603200-38610200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:38603200-38610200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:38603200-38610400	Weak transcription	NH-A	brain
40	chr19:38603200-38611200	Weak transcription	Fetal Heart	heart
41	chr19:38603400-38610200	Weak transcription	Placenta	Placenta
42	chr19:38603600-38609200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr19:38603800-38609800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr19:38604000-38613400	Strong transcription	Primary B cells from cord blood	blood
45	chr19:38604200-38609800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:38604200-38610000	Weak transcription	Brain Angular Gyrus	brain
47	chr19:38604400-38609800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr19:38604600-38609000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr19:38604600-38609800	Weak transcription	Colon Smooth Muscle	Colon
50	chr19:38604600-38610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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