Variant report

Variant	rs35937370
Chromosome Location	chr1:76174571-76174572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:76171538..76176296-chr1:76182594..76187669,7	K562	blood:
2	chr1:76168335..76170790-chr1:76173153..76175492,2	K562	blood:
3	chr1:76171478..76174682-chr1:76188816..76193676,7	K562	blood:

Variant related genes	Relation type
ENSG00000178193	Chromatin interaction
ENSG00000117054	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1146591	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724819	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732407	1.00[ASN][1000 genomes]
rs12740253	1.00[ASN][1000 genomes]
rs12743235	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759535	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759945	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17848065	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34079902	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34270172	1.00[ASN][1000 genomes]
rs34748623	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892795	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898565	1.00[ASN][1000 genomes]
rs34977392	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35283569	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35321712	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416402	1.00[ASN][1000 genomes]
rs35424470	1.00[ASN][1000 genomes]
rs35505941	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614774	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35857029	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35961154	1.00[ASN][1000 genomes]
rs35970385	1.00[ASN][1000 genomes]
rs4335328	1.00[ASN][1000 genomes]
rs4472716	1.00[ASN][1000 genomes]
rs55764969	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55970724	1.00[ASN][1000 genomes]
rs57218288	1.00[ASN][1000 genomes]
rs57389460	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745317	1.00[ASN][1000 genomes]
rs5745328	1.00[ASN][1000 genomes]
rs5745332	1.00[ASN][1000 genomes]
rs5745352	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745355	1.00[ASN][1000 genomes]
rs5745362	1.00[ASN][1000 genomes]
rs5745368	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745369	1.00[ASN][1000 genomes]
rs5745376	1.00[ASN][1000 genomes]
rs5745380	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745391	1.00[ASN][1000 genomes]
rs5745425	1.00[ASN][1000 genomes]
rs5745428	1.00[ASN][1000 genomes]
rs5745434	1.00[ASN][1000 genomes]
rs5745438	1.00[ASN][1000 genomes]
rs71502707	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71656849	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71656851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71656852	1.00[ASN][1000 genomes]
rs71656854	1.00[ASN][1000 genomes]
rs71656855	1.00[ASN][1000 genomes]
rs71656857	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71656858	1.00[ASN][1000 genomes]
rs74089618	1.00[ASN][1000 genomes]
rs74089619	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv427675	chr1:76070382-76187748	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv870520	chr1:76088392-76206490	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv830281	chr1:76095292-76251053	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv871572	chr1:76161889-76208488	Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76173600-76174800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links