Variant report
| Variant | rs35939963 |
|---|---|
| Chromosome Location | chr5:113428299-113428300 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11241264 | 0.81[EUR][1000 genomes] |
| rs11241265 | 0.81[EUR][1000 genomes] |
| rs11949418 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11952942 | 1.00[ASN][1000 genomes] |
| rs11954178 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13154079 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13161970 | 0.81[EUR][1000 genomes] |
| rs13185767 | 0.84[ASN][1000 genomes] |
| rs13189068 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17348806 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2035634 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2721324 | 0.85[ASN][1000 genomes] |
| rs2931495 | 0.85[ASN][1000 genomes] |
| rs34016127 | 0.81[EUR][1000 genomes] |
| rs34252898 | 0.81[EUR][1000 genomes] |
| rs35525809 | 0.81[EUR][1000 genomes] |
| rs35703899 | 0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4389680 | 0.81[EUR][1000 genomes] |
| rs6594782 | 0.92[ASN][1000 genomes] |
| rs6892544 | 0.81[EUR][1000 genomes] |
| rs6893099 | 0.81[EUR][1000 genomes] |
| rs7726063 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471042 | chr5:113160490-113440892 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv882726 | chr5:113404933-113555626 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020064 | chr5:113418512-113492951 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113426800-113428600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
