Variant report

Variant	rs6594782
Chromosome Location	chr5:113400212-113400213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11241260	0.84[ASN][1000 genomes]
rs11949418	0.92[ASN][1000 genomes]
rs11952942	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13154079	1.00[ASN][1000 genomes]
rs13185767	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13189068	0.92[ASN][1000 genomes]
rs17348806	0.92[ASN][1000 genomes]
rs35703899	0.92[ASN][1000 genomes]
rs35939963	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113395800-113400600	Weak transcription	Fetal Heart	heart
2	chr5:113396200-113400600	Weak transcription	Right Atrium	heart
3	chr5:113397600-113404200	Weak transcription	Pancreas	Pancrea
4	chr5:113399000-113406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:113399200-113405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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