Variant report

Variant	rs35948094
Chromosome Location	chr7:117456901-117456902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117450940..117453644-chr7:117454912..117457545,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34308090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34676706	1.00[AMR][1000 genomes]
rs34750481	1.00[AMR][1000 genomes]
rs35047237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35124462	1.00[AMR][1000 genomes]
rs35154668	1.00[AMR][1000 genomes]
rs35222380	1.00[AMR][1000 genomes]
rs35570750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117448600-117458400	Weak transcription	Esophagus	oesophagus
2	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
3	chr7:117449600-117458400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:117450200-117458400	Weak transcription	Fetal Brain Male	brain
5	chr7:117451600-117459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:117453800-117458200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:117453800-117458400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:117454000-117459400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:117454600-117458600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:117455200-117467400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:117455800-117457200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:117456000-117457000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:117456000-117457000	Enhancers	NHLF	lung
14	chr7:117456000-117458200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:117456200-117458400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:117456200-117458400	Weak transcription	Brain Substantia Nigra	brain
17	chr7:117456400-117458400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:117456400-117458600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:117456400-117459200	Enhancers	HUVEC	blood vessel
20	chr7:117456400-117464600	Weak transcription	Fetal Heart	heart
21	chr7:117456600-117457400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:117456600-117458200	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:117456600-117478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:117456800-117458000	Weak transcription	Muscle Satellite Cultured Cells	--

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