Variant report

Variant	rs34676706
Chromosome Location	chr7:117448563-117448564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34308090	1.00[AMR][1000 genomes]
rs34700268	0.96[AFR][1000 genomes]
rs34750481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34954896	0.88[AFR][1000 genomes]
rs34968508	0.88[AFR][1000 genomes]
rs35047237	1.00[AMR][1000 genomes]
rs35124462	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35154668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35222380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35570750	1.00[AMR][1000 genomes]
rs35948094	1.00[AMR][1000 genomes]
rs7811545	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117428400-117448600	Weak transcription	Fetal Kidney	kidney
3	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
4	chr7:117432600-117448800	Weak transcription	Fetal Intestine Small	intestine
5	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
6	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:117444400-117451600	Enhancers	Fetal Heart	heart
8	chr7:117445000-117450800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:117445600-117450200	Weak transcription	Pancreas	Pancrea
10	chr7:117446200-117451000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:117447400-117449000	Enhancers	Fetal Brain Female	brain
12	chr7:117447400-117449200	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:117447400-117449800	Enhancers	Brain Substantia Nigra	brain
14	chr7:117447400-117450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:117447600-117448600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:117447600-117448600	Enhancers	Liver	Liver
17	chr7:117447600-117448600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:117447600-117448600	Enhancers	Left Ventricle	heart
19	chr7:117447600-117449600	Enhancers	Adipose Nuclei	Adipose
20	chr7:117447600-117450200	Enhancers	Fetal Brain Male	brain
21	chr7:117447600-117450800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:117447600-117453400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:117447800-117448600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:117447800-117448600	Enhancers	Right Ventricle	heart
25	chr7:117447800-117448600	Enhancers	Small Intestine	intestine
26	chr7:117447800-117448800	Enhancers	Colon Smooth Muscle	Colon
27	chr7:117447800-117448800	Enhancers	Stomach Smooth Muscle	stomach
28	chr7:117447800-117449000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr7:117447800-117449000	Enhancers	Stomach Mucosa	stomach
30	chr7:117447800-117449600	Enhancers	Brain Germinal Matrix	brain
31	chr7:117447800-117450000	Enhancers	Fetal Lung	lung
32	chr7:117447800-117450200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:117447800-117450400	Enhancers	Duodenum Mucosa	Duodenum
34	chr7:117447800-117451200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr7:117448000-117449200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr7:117448000-117449600	Enhancers	Brain Angular Gyrus	brain
37	chr7:117448000-117450400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr7:117448000-117450400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:117448000-117453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:117448200-117448600	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr7:117448200-117448600	Enhancers	Rectal Smooth Muscle	rectum
42	chr7:117448200-117449400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:117448200-117449600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:117448200-117449600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:117448400-117448600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:117448400-117448600	Enhancers	Esophagus	oesophagus
47	chr7:117448400-117448600	Enhancers	Fetal Intestine Large	intestine
48	chr7:117448400-117448600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
49	chr7:117448400-117448600	Enhancers	NH-A	brain
50	chr7:117448400-117448600	Enhancers	Osteobl	bone

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