Variant report

Variant	rs34700268
Chromosome Location	chr7:117423529-117423530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs34158598	1.00[AMR][1000 genomes]
rs34320215	1.00[AMR][1000 genomes]
rs34369856	1.00[AMR][1000 genomes]
rs34433037	1.00[AMR][1000 genomes]
rs34676706	0.96[AFR][1000 genomes]
rs34750481	1.00[AFR][1000 genomes]
rs34884539	1.00[AMR][1000 genomes]
rs34892929	1.00[AMR][1000 genomes]
rs34954896	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34968508	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35029552	1.00[AMR][1000 genomes]
rs35124462	1.00[AFR][1000 genomes]
rs35131082	1.00[AMR][1000 genomes]
rs35154668	1.00[AFR][1000 genomes]
rs35167886	1.00[AMR][1000 genomes]
rs35222380	1.00[AFR][1000 genomes]
rs35238611	1.00[AMR][1000 genomes]
rs35239381	1.00[AMR][1000 genomes]
rs35647432	1.00[AMR][1000 genomes]
rs35994051	1.00[AMR][1000 genomes]
rs6942892	1.00[AMR][1000 genomes]
rs6966254	1.00[AMR][1000 genomes]
rs6972747	1.00[AMR][1000 genomes]
rs6977231	1.00[AMR][1000 genomes]
rs6977295	1.00[AMR][1000 genomes]
rs7778541	1.00[AMR][1000 genomes]
rs7811545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:117396600-117431200	Weak transcription	Aorta	Aorta
5	chr7:117397000-117431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:117397000-117431200	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117397000-117431600	Weak transcription	Ovary	ovary
8	chr7:117397200-117431200	Weak transcription	Pancreas	Pancrea
9	chr7:117398600-117431200	Weak transcription	Fetal Stomach	stomach
10	chr7:117400800-117431200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:117401400-117434000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:117409800-117433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:117412200-117431200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:117412200-117431200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:117412400-117431200	Weak transcription	Esophagus	oesophagus
16	chr7:117417000-117425800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:117417800-117425800	Weak transcription	Brain Angular Gyrus	brain
18	chr7:117417800-117431200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:117417800-117431200	Weak transcription	Brain Germinal Matrix	brain
20	chr7:117417800-117431600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:117418000-117427400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:117418000-117430400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:117418000-117431200	Weak transcription	Adipose Nuclei	Adipose
24	chr7:117418000-117431200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr7:117418000-117431400	Weak transcription	Fetal Lung	lung
26	chr7:117418200-117423600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:117418400-117430400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:117420800-117423600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:117421200-117424600	Enhancers	NHLF	lung
30	chr7:117421400-117424400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:117421400-117431000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:117421400-117444400	Weak transcription	Fetal Heart	heart
33	chr7:117421600-117431200	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:117421800-117431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:117421800-117431200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:117422000-117425600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:117422000-117431000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:117422000-117431200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:117422000-117431200	Weak transcription	Brain Anterior Caudate	brain
40	chr7:117422400-117431800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:117423200-117431000	Weak transcription	Fetal Brain Female	brain
42	chr7:117423400-117424200	Weak transcription	Fetal Brain Male	brain
43	chr7:117423400-117425000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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