Variant report
| Variant | rs6977231 |
|---|---|
| Chromosome Location | chr7:117342323-117342324 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:14)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:14 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:117065049-117068137..7:117341506-117356953 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:116651084-116657331..7:117341506-117356953 | Hela-S3 | cervix: | |
| 3 | 7:117251668-117255413..7:117341506-117356953 | Hela-S3 | cervix: | |
| 4 | 7:116754962-116765597..7:117341506-117356953 | Hela-S3 | cervix: | |
| 5 | 7:116728195-116740907..7:117341506-117356953 | Hela-S3 | cervix: | |
| 6 | 7:116434729-116454408..7:117341506-117356953 | Hela-S3 | cervix: | |
| 7 | 7:117114628-117119361..7:117341506-117356953 | H1-hESC | embryonic stem cell: | embryo |
| 8 | chr7:117340357..117343008-chr7:117343379..117345686,2 | K562 | blood: | |
| 9 | 7:117100350-117112126..7:117341506-117356953 | GM12878 | blood: | |
| 10 | 7:115847372-115857098..7:117341506-117356953 | Hela-S3 | cervix: | |
| 11 | 7:115890993-115892266..7:117341506-117356953 | H1-hESC | embryonic stem cell: | embryo |
| 12 | 7:116307511-116321259..7:117341506-117356953 | Hela-S3 | cervix: | |
| 13 | 7:116604327-116608063..7:117341506-117356953 | H1-hESC | embryonic stem cell: | embryo |
| 14 | 7:115861595-115870968..7:117341506-117356953 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000154438 | Chromatin interaction |
| ENSG00000228368 | Chromatin interaction |
| ENSG00000004866 | Chromatin interaction |
| ENSG00000198898 | Chromatin interaction |
| ENSG00000105976 | Chromatin interaction |
| ENSG00000226367 | Chromatin interaction |
| ENSG00000001626 | Chromatin interaction |
| ENSG00000135269 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs34158598 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34320215 | 1.00[AMR][1000 genomes] |
| rs34369856 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34433037 | 1.00[AMR][1000 genomes] |
| rs34700268 | 1.00[AMR][1000 genomes] |
| rs34884539 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34892929 | 1.00[AMR][1000 genomes] |
| rs34954896 | 1.00[AMR][1000 genomes] |
| rs34968508 | 1.00[AMR][1000 genomes] |
| rs35029552 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35131082 | 1.00[AMR][1000 genomes] |
| rs35167886 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35238611 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35239381 | 1.00[AMR][1000 genomes] |
| rs35647432 | 1.00[AMR][1000 genomes] |
| rs35994051 | 1.00[AMR][1000 genomes] |
| rs6942892 | 1.00[AMR][1000 genomes] |
| rs6966254 | 1.00[AMR][1000 genomes] |
| rs6972747 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6977295 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7778541 | 1.00[AMR][1000 genomes] |
| rs7811545 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117327000-117376400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr7:117338800-117343200 | Weak transcription | Hela-S3 | cervix |
