Variant report

Variant	rs6942892
Chromosome Location	chr7:117257309-117257310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10487370	0.91[YRI][hapmap]
rs17132549	0.90[YRI][hapmap]
rs17139984	0.90[YRI][hapmap]
rs17139994	0.91[YRI][hapmap]
rs17140095	0.91[YRI][hapmap]
rs17140169	0.91[YRI][hapmap]
rs34158598	1.00[AMR][1000 genomes]
rs34320215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34369856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34433037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34465975	0.89[YRI][hapmap]
rs34700268	1.00[AMR][1000 genomes]
rs34884539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34892929	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34954896	1.00[AMR][1000 genomes]
rs34968508	1.00[AMR][1000 genomes]
rs35029552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35131082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35167886	1.00[AMR][1000 genomes]
rs35238611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35239381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35647432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35855138	0.90[YRI][hapmap]
rs35994051	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971294	0.91[YRI][hapmap]
rs6972747	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6977231	1.00[AMR][1000 genomes]
rs6977295	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7778541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811545	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7811667	0.91[YRI][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117253000-117267200	Weak transcription	Dnd41	blood
3	chr7:117256400-117258000	Enhancers	Fetal Intestine Small	intestine
4	chr7:117256400-117258200	Enhancers	Fetal Intestine Large	intestine
5	chr7:117256600-117257600	Enhancers	Stomach Mucosa	stomach
6	chr7:117256600-117258000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr7:117256600-117258200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:117257000-117257400	Flanking Active TSS	A549	lung
9	chr7:117257000-117263600	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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