Variant report

Variant	rs35855138
Chromosome Location	chr7:117125609-117125610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr7:117125289-117125610	H1-hESC	embryonic stem cell:	n/a	n/a
2	CEBPB	chr7:117125049-117125645	Hela-S3	cervix:	n/a	chr7:117125568-117125580 chr7:117125263-117125274 chr7:117125261-117125272 chr7:117125353-117125364 chr7:117125261-117125274
3	GATA3	chr7:117125136-117125682	MCF-7	breast:	n/a	n/a
4	POLR2A	chr7:117124981-117125822	SK-N-MC	brain:	n/a	n/a
5	SIN3AK20	chr7:117125183-117125721	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	7:116434729-116454408..7:117120895-117125676	Hela-S3	cervix:
2	7:115847372-115857098..7:117120895-117125676	Hela-S3	cervix:
3	chr7:117123377..117126210-chr7:117833079..117835993,3	K562	blood:
4	chr7:117125349..117127629-chr7:117128449..117131310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237974	TF binding region
ENSG00000135269	Chromatin interaction
ENSG00000198898	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10155917	1.00[MEX][hapmap]
rs10487370	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132544	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17132545	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17132549	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139657	1.00[MEX][hapmap]
rs17139750	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139754	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139756	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139757	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139762	0.83[AMR][1000 genomes]
rs17139765	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139783	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139785	0.82[YRI][hapmap]
rs17139810	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139813	1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139819	1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139824	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139837	0.82[YRI][hapmap]
rs17139866	1.00[AMR][1000 genomes]
rs17139874	1.00[AMR][1000 genomes]
rs17139887	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139929	1.00[ASW][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139984	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139994	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140095	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140169	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34034688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34239891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34340257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34427586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34436445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34463627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34465975	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs34484276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34530771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34558486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34599010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34710125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34717021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34808223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35011694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35026177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35113266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35114123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35278352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35321167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35376221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35435021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35493996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35508774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35666329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35714998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35821559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35827235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36143091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942892	0.90[YRI][hapmap]
rs6944750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953663	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs6971294	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972328	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs6978006	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs7789582	0.83[AMR][1000 genomes]
rs7794310	1.00[MEX][hapmap]
rs7811667	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916726	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117121200-117126000	Weak transcription	Colonic Mucosa	Colon
2	chr7:117122400-117127800	Enhancers	Fetal Intestine Large	intestine
3	chr7:117123800-117126200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:117124000-117132200	Enhancers	Fetal Intestine Small	intestine
5	chr7:117124200-117127400	Enhancers	Dnd41	blood
6	chr7:117124600-117126000	Weak transcription	Pancreas	Pancrea
7	chr7:117124600-117126400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr7:117125000-117126200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:117125000-117126600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:117125000-117126600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:117125000-117126800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:117125000-117128000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:117125200-117126400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:117125200-117126400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:117125200-117126400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:117125200-117126400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr7:117125200-117126800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:117125600-117129000	Weak transcription	Duodenum Mucosa	Duodenum

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