Variant report

Variant	rs17139929
Chromosome Location	chr7:117117763-117117764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117114628-117119361..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
2	7:116610596-116619447..7:117114628-117119361	H1-hESC	embryonic stem cell:	embryo
3	7:117114628-117119361..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000213050	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10487370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132544	0.83[AMR][1000 genomes]
rs17132545	1.00[AMR][1000 genomes]
rs17132549	1.00[ASW][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139750	0.83[AMR][1000 genomes]
rs17139754	0.83[AMR][1000 genomes]
rs17139756	0.83[AMR][1000 genomes]
rs17139757	0.83[AMR][1000 genomes]
rs17139762	0.83[AMR][1000 genomes]
rs17139765	0.83[AMR][1000 genomes]
rs17139783	0.83[AMR][1000 genomes]
rs17139810	1.00[AMR][1000 genomes]
rs17139813	1.00[AMR][1000 genomes]
rs17139819	1.00[AMR][1000 genomes]
rs17139824	1.00[AMR][1000 genomes]
rs17139866	1.00[AMR][1000 genomes]
rs17139874	1.00[AMR][1000 genomes]
rs17139887	1.00[AMR][1000 genomes]
rs17139984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34034688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34239891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34340257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34427586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34436445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34463627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34465975	1.00[ASW][hapmap]
rs34484276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34530771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34558486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34599010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34710125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34717021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34808223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35011694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35026177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35113266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35114123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35278352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35321167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35376221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35435021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35493996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35508774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35666329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35714998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35821559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35827235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35855138	1.00[ASW][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36143091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953663	0.83[AMR][1000 genomes]
rs6971294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972328	0.83[AMR][1000 genomes]
rs6978006	0.83[AMR][1000 genomes]
rs7789582	0.83[AMR][1000 genomes]
rs7811667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916726	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117113200-117119200	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:117116200-117118200	Enhancers	Hela-S3	cervix

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