Variant report

Variant	rs6971294
Chromosome Location	chr7:117133886-117133887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10487370	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132544	0.83[AMR][1000 genomes]
rs17132545	1.00[AMR][1000 genomes]
rs17132549	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139750	0.83[AMR][1000 genomes]
rs17139754	0.83[AMR][1000 genomes]
rs17139756	0.83[AMR][1000 genomes]
rs17139757	0.83[AMR][1000 genomes]
rs17139762	0.83[AMR][1000 genomes]
rs17139765	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139783	0.83[AMR][1000 genomes]
rs17139810	1.00[AMR][1000 genomes]
rs17139813	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139819	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139824	1.00[AMR][1000 genomes]
rs17139866	1.00[AMR][1000 genomes]
rs17139874	1.00[AMR][1000 genomes]
rs17139887	1.00[AMR][1000 genomes]
rs17139929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139984	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139994	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140095	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140169	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34034688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34239891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34340257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34427586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34436445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34463627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34465975	1.00[YRI][hapmap]
rs34484276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34530771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34558486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34599010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34710125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34717021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34808223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35011694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35026177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35113266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35114123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35278352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35321167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35376221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35435021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35493996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35508774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35666329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35714998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35821559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35827235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35855138	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36143091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942892	0.91[YRI][hapmap]
rs6944750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953663	0.83[AMR][1000 genomes]
rs6972328	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs6978006	0.83[AMR][1000 genomes]
rs7778541	0.80[YRI][hapmap]
rs7789582	0.83[AMR][1000 genomes]
rs7811667	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916726	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
2	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117130800-117134200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117131000-117134600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:117131200-117139600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117132400-117134000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:117132400-117134200	Enhancers	Dnd41	blood
8	chr7:117133800-117134000	Enhancers	Fetal Intestine Small	intestine
9	chr7:117133800-117134000	Enhancers	Sigmoid Colon	Sigmoid Colon

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