Variant report

Variant	rs34465975
Chromosome Location	chr7:117119262-117119263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10155917	1.00[MEX][hapmap]
rs10487370	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132544	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17132545	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17132549	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139657	1.00[MEX][hapmap]
rs17139750	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139754	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139756	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139757	0.83[AMR][1000 genomes]
rs17139762	0.83[AMR][1000 genomes]
rs17139765	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139783	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139785	0.80[YRI][hapmap]
rs17139810	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139813	1.00[MEX][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139819	1.00[MEX][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139824	1.00[AMR][1000 genomes]
rs17139837	0.80[YRI][hapmap]
rs17139866	1.00[AMR][1000 genomes]
rs17139874	1.00[AMR][1000 genomes]
rs17139887	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139929	1.00[ASW][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139984	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139994	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140095	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140169	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34034688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34239891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34340257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34427586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34436445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34463627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34484276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34530771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34558486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34599010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34710125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34717021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34808223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35011694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35026177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35113266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35114123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35278352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35321167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35376221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35435021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35493996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35508774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35666329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35714998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35821559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35827235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35855138	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36143091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942892	0.89[YRI][hapmap]
rs6944750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953663	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs6971294	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972328	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs6978006	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs7789582	0.83[AMR][1000 genomes]
rs7794310	1.00[MEX][hapmap]
rs7811667	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916726	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117118200-117121000	Weak transcription	Hela-S3	cervix
2	chr7:117118400-117120400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:117118400-117124400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr7:117118600-117119600	Active TSS	Fetal Intestine Large	intestine
5	chr7:117118600-117120000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:117118600-117121200	Active TSS	Colonic Mucosa	Colon
7	chr7:117118600-117122800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr7:117118600-117123200	Active TSS	Duodenum Mucosa	Duodenum
9	chr7:117118800-117119600	Active TSS	Pancreas	Pancrea
10	chr7:117118800-117119800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr7:117118800-117120400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr7:117118800-117120400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr7:117118800-117120600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr7:117118800-117121200	Active TSS	Rectal Smooth Muscle	rectum
15	chr7:117118800-117123200	Active TSS	Fetal Intestine Small	intestine
16	chr7:117119000-117119400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:117119000-117119400	Active TSS	Brain Angular Gyrus	brain
18	chr7:117119000-117119600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:117119000-117119600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:117119000-117119600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:117119000-117119800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
22	chr7:117119000-117120000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
23	chr7:117119000-117120200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:117119000-117120200	Active TSS	Placenta Amnion	Placenta Amnion
25	chr7:117119000-117120400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:117119000-117120400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:117119000-117120400	Active TSS	Esophagus	oesophagus
28	chr7:117119000-117120400	Active TSS	Stomach Mucosa	stomach
29	chr7:117119000-117120600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr7:117119000-117120600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr7:117119000-117120600	Active TSS	Brain Anterior Caudate	brain
32	chr7:117119000-117120600	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr7:117119000-117120600	Active TSS	Right Atrium	heart
34	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
36	chr7:117119200-117119400	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:117119200-117119400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
38	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:117119200-117119400	Bivalent Enhancer	Liver	Liver
40	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
41	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
42	chr7:117119200-117119400	Active TSS	Placenta	Placenta
43	chr7:117119200-117119400	Active TSS	Fetal Stomach	stomach
44	chr7:117119200-117119400	Bivalent Enhancer	Fetal Thymus	thymus
45	chr7:117119200-117119400	Enhancers	Right Ventricle	heart
46	chr7:117119200-117119400	Flanking Bivalent TSS/Enh	NH-A	brain
47	chr7:117119200-117119600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:117119200-117119600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr7:117119200-117119600	Active TSS	Brain Hippocampus Middle	brain
50	chr7:117119200-117119600	Bivalent/Poised TSS	Fetal Brain Male	brain

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