Variant report

Variant	rs34340257
Chromosome Location	chr7:117112341-117112342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117108067..117110269-chr7:117111131..117113767,2	K562	blood:
2	chr7:117107707..117110294-chr7:117111075..117113526,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10487370	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132544	0.83[AMR][1000 genomes]
rs17132545	1.00[AMR][1000 genomes]
rs17132549	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139750	0.83[AMR][1000 genomes]
rs17139754	0.83[AMR][1000 genomes]
rs17139756	0.83[AMR][1000 genomes]
rs17139757	0.83[AMR][1000 genomes]
rs17139762	0.83[AMR][1000 genomes]
rs17139765	0.83[AMR][1000 genomes]
rs17139783	0.83[AMR][1000 genomes]
rs17139810	1.00[AMR][1000 genomes]
rs17139813	1.00[AMR][1000 genomes]
rs17139819	1.00[AMR][1000 genomes]
rs17139824	1.00[AMR][1000 genomes]
rs17139866	1.00[AMR][1000 genomes]
rs17139874	1.00[AMR][1000 genomes]
rs17139887	1.00[AMR][1000 genomes]
rs17139929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139994	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140013	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34034688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34239891	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34427586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34436445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34463627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34484276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34530771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34558486	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34599010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34710125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34717021	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34808223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870970	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35011694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35026177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35045003	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35113266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35114123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35278352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35321167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35376221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35435021	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490261	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35493996	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35508774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35666329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35714998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35821559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35827235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35855138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36143091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953663	0.83[AMR][1000 genomes]
rs6971294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972328	0.83[AMR][1000 genomes]
rs6978006	0.83[AMR][1000 genomes]
rs7789582	0.83[AMR][1000 genomes]
rs7811667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916726	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117110400-117113200	Enhancers	Dnd41	blood
2	chr7:117110600-117113400	Enhancers	Fetal Heart	heart
3	chr7:117111200-117112600	Weak transcription	Brain Substantia Nigra	brain
4	chr7:117111200-117112600	Enhancers	GM12878-XiMat	blood
5	chr7:117111200-117113600	Weak transcription	Pancreas	Pancrea
6	chr7:117112000-117113000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:117112200-117114000	Weak transcription	Small Intestine	intestine

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