Variant report

Variant	rs6978006
Chromosome Location	chr7:117025606-117025607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117020936..117022628-chr7:117023583..117026209,2	MCF-7	breast:
2	chr7:116853244..116855947-chr7:117024451..117026371,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10487370	0.83[AMR][1000 genomes]
rs17132544	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132545	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17132549	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs17139657	0.82[YRI][hapmap]
rs17139750	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139754	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139756	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139757	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139762	1.00[AFR][1000 genomes]
rs17139765	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17139783	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139785	1.00[YRI][hapmap]
rs17139810	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139813	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139819	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139824	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139837	1.00[YRI][hapmap]
rs17139866	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139874	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139887	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139929	0.83[AMR][1000 genomes]
rs17139984	0.83[AMR][1000 genomes]
rs17139994	0.83[AMR][1000 genomes]
rs17140013	0.83[AMR][1000 genomes]
rs17140095	0.83[AMR][1000 genomes]
rs17140169	0.83[AMR][1000 genomes]
rs34009249	0.83[AMR][1000 genomes]
rs34034688	0.83[AMR][1000 genomes]
rs34123455	0.83[AMR][1000 genomes]
rs34239891	0.83[AMR][1000 genomes]
rs34340257	0.83[AMR][1000 genomes]
rs34427586	0.83[AMR][1000 genomes]
rs34436445	0.83[AMR][1000 genomes]
rs34463627	0.83[AMR][1000 genomes]
rs34465975	0.80[YRI][hapmap]
rs34484276	0.83[AMR][1000 genomes]
rs34530771	0.83[AMR][1000 genomes]
rs34558486	0.83[AMR][1000 genomes]
rs34599010	0.83[AMR][1000 genomes]
rs34710125	0.83[AMR][1000 genomes]
rs34717021	0.83[AMR][1000 genomes]
rs34808223	0.83[AMR][1000 genomes]
rs34870970	0.83[AMR][1000 genomes]
rs35011694	0.83[AMR][1000 genomes]
rs35026177	0.83[AMR][1000 genomes]
rs35045003	0.83[AMR][1000 genomes]
rs35113266	0.83[AMR][1000 genomes]
rs35114123	0.83[AMR][1000 genomes]
rs35197837	0.83[AMR][1000 genomes]
rs35278352	0.83[AMR][1000 genomes]
rs35314519	0.83[AMR][1000 genomes]
rs35321167	0.83[AMR][1000 genomes]
rs35376221	0.83[AMR][1000 genomes]
rs35396010	0.83[AMR][1000 genomes]
rs35435021	0.83[AMR][1000 genomes]
rs35490261	0.83[AMR][1000 genomes]
rs35493996	0.83[AMR][1000 genomes]
rs35508774	0.83[AMR][1000 genomes]
rs35666329	0.83[AMR][1000 genomes]
rs35714998	0.83[AMR][1000 genomes]
rs35753200	0.83[AMR][1000 genomes]
rs35778610	0.83[AMR][1000 genomes]
rs35802750	0.83[AMR][1000 genomes]
rs35821559	0.83[AMR][1000 genomes]
rs35827235	0.83[AMR][1000 genomes]
rs35855138	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs36143091	0.83[AMR][1000 genomes]
rs6944750	0.83[AMR][1000 genomes]
rs6953663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971294	0.83[AMR][1000 genomes]
rs6972328	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789582	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811667	0.83[AMR][1000 genomes]
rs916726	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117020600-117028000	Enhancers	Hela-S3	cervix
2	chr7:117024600-117026200	Enhancers	Fetal Lung	lung
3	chr7:117025000-117025800	Weak transcription	A549	lung
4	chr7:117025400-117026000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:117025600-117026000	Enhancers	Dnd41	blood
6	chr7:117025600-117026000	Enhancers	Osteobl	bone

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