Variant report

Variant	rs17139813
Chromosome Location	chr7:117057650-117057651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:117057168-117062301	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10487370	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12536184	1.00[MEX][hapmap]
rs17132544	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17132545	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132549	1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139657	1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs17139750	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139754	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139756	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139757	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139762	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139765	0.82[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139783	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17139785	1.00[YRI][hapmap]
rs17139810	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139819	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139824	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139837	1.00[YRI][hapmap]
rs17139866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139887	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139929	1.00[AMR][1000 genomes]
rs17139984	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139994	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17140013	1.00[AMR][1000 genomes]
rs17140095	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17140169	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs34009249	1.00[AMR][1000 genomes]
rs34034688	1.00[AMR][1000 genomes]
rs34123455	1.00[AMR][1000 genomes]
rs34239891	1.00[AMR][1000 genomes]
rs34340257	1.00[AMR][1000 genomes]
rs34427586	1.00[AMR][1000 genomes]
rs34436445	1.00[AMR][1000 genomes]
rs34463627	1.00[AMR][1000 genomes]
rs34465975	1.00[MEX][hapmap];0.80[YRI][hapmap]
rs34484276	1.00[AMR][1000 genomes]
rs34530771	1.00[AMR][1000 genomes]
rs34558486	1.00[AMR][1000 genomes]
rs34599010	1.00[AMR][1000 genomes]
rs34710125	1.00[AMR][1000 genomes]
rs34717021	1.00[AMR][1000 genomes]
rs34808223	1.00[AMR][1000 genomes]
rs34870970	1.00[AMR][1000 genomes]
rs35011694	1.00[AMR][1000 genomes]
rs35026177	1.00[AMR][1000 genomes]
rs35045003	1.00[AMR][1000 genomes]
rs35113266	1.00[AMR][1000 genomes]
rs35114123	1.00[AMR][1000 genomes]
rs35197837	1.00[AMR][1000 genomes]
rs35278352	1.00[AMR][1000 genomes]
rs35314519	1.00[AMR][1000 genomes]
rs35321167	1.00[AMR][1000 genomes]
rs35376221	1.00[AMR][1000 genomes]
rs35396010	1.00[AMR][1000 genomes]
rs35435021	1.00[AMR][1000 genomes]
rs35490261	1.00[AMR][1000 genomes]
rs35493996	1.00[AMR][1000 genomes]
rs35508774	1.00[AMR][1000 genomes]
rs35666329	1.00[AMR][1000 genomes]
rs35714998	1.00[AMR][1000 genomes]
rs35753200	1.00[AMR][1000 genomes]
rs35778610	1.00[AMR][1000 genomes]
rs35802750	1.00[AMR][1000 genomes]
rs35821559	1.00[AMR][1000 genomes]
rs35827235	1.00[AMR][1000 genomes]
rs35855138	1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs36143091	1.00[AMR][1000 genomes]
rs6944750	1.00[AMR][1000 genomes]
rs6953663	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6971294	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6972328	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6978006	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7789582	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7794310	1.00[MEX][hapmap]
rs7811667	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs916726	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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