The 2.0 version of rSNPBase

Variant report

Variant rs34239891
Chromosome Location chr1:65277062-65277063
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:65245800-65298600 Weak transcription Lung lung
2 chr1:65248600-65298600 Weak transcription Rectal Smooth Muscle rectum
3 chr1:65253600-65279600 Weak transcription Fetal Stomach stomach
4 chr1:65256200-65289800 Weak transcription Pancreas Pancrea
5 chr1:65257000-65283200 Weak transcription Small Intestine intestine
6 chr1:65257200-65288200 Weak transcription Colon Smooth Muscle Colon
7 chr1:65257200-65289800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:65257200-65289800 Weak transcription Fetal Kidney kidney
9 chr1:65257200-65289800 Weak transcription Ovary ovary
10 chr1:65257200-65289800 Weak transcription HUVEC blood vessel
11 chr1:65257200-65295200 Weak transcription Fetal Muscle Trunk muscle
12 chr1:65257200-65298400 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:65257400-65280400 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:65257400-65280600 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:65257400-65280800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:65257400-65295200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:65257400-65295800 Weak transcription Fetal Muscle Leg muscle
18 chr1:65257400-65298600 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:65258200-65288400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:65258400-65280400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr1:65260000-65295200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:65263400-65298400 Weak transcription Psoas Muscle Psoas
23 chr1:65264800-65298800 Weak transcription Gastric stomach
24 chr1:65265600-65297800 Weak transcription HMEC breast
25 chr1:65266000-65298600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:65268000-65299000 Weak transcription H9 Cell Line embryonic stem cell
27 chr1:65268600-65281400 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:65268800-65280400 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:65268800-65280600 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:65269000-65296600 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr1:65270600-65277200 Weak transcription Right Ventricle heart
32 chr1:65271200-65279600 Weak transcription Fetal Intestine Large intestine
33 chr1:65271200-65280400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:65271200-65294800 Weak transcription Left Ventricle heart
35 chr1:65271400-65280200 Weak transcription Primary hematopoietic stem cells blood
36 chr1:65271400-65280600 Weak transcription Brain Anterior Caudate brain
37 chr1:65273200-65294600 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:65273200-65295000 Weak transcription Right Atrium heart
39 chr1:65273200-65298400 Weak transcription Fetal Lung lung
40 chr1:65273200-65300600 Weak transcription Esophagus oesophagus
41 chr1:65273600-65289800 Weak transcription Stomach Mucosa stomach
42 chr1:65274000-65277400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:65274000-65301400 Weak transcription Fetal Brain Male brain
44 chr1:65274200-65281800 Weak transcription Fetal Thymus thymus
45 chr1:65274600-65279600 Weak transcription Fetal Intestine Small intestine
46 chr1:65274600-65299200 Weak transcription Fetal Brain Female brain
47 chr1:65275000-65279000 Weak transcription Brain Germinal Matrix brain
48 chr1:65276200-65278600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:65276200-65279200 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr1:65276200-65279600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015