Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116938981..116940552-chr7:116950596..116953276,2	K562	blood:
2	7:115847372-115857098..7:116949919-116957096	GM12878	blood:
3	7:116434729-116454408..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo
4	chr7:116950227..116952723-chr7:116968350..116970678,2	K562	blood:
5	7:115861595-115870968..7:116949919-116957096	Hela-S3	cervix:
6	7:116604327-116608063..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo
7	chr7:116944814..116946552-chr7:116952146..116954082,2	K562	blood:
8	chr16:731050..731947-chr7:116952447..116953067,2	MCF-7	breast:
9	7:115890993-115892266..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo

No data

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12536184	1.00[MEX][hapmap]
rs17132544	0.82[YRI][hapmap]
rs17132545	0.82[YRI][hapmap]
rs17132549	1.00[MEX][hapmap]
rs17139750	0.82[YRI][hapmap]
rs17139754	0.82[YRI][hapmap]
rs17139756	0.82[YRI][hapmap]
rs17139757	0.80[YRI][hapmap]
rs17139765	0.82[YRI][hapmap]
rs17139783	0.82[YRI][hapmap]
rs17139785	0.82[YRI][hapmap]
rs17139810	0.82[YRI][hapmap]
rs17139813	1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs17139819	1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs17139824	0.80[YRI][hapmap]
rs17139837	0.82[YRI][hapmap]
rs17139887	0.82[YRI][hapmap]
rs34465975	1.00[MEX][hapmap]
rs35855138	1.00[MEX][hapmap]
rs6953663	0.82[YRI][hapmap]
rs6972328	1.00[MKK][hapmap];0.82[YRI][hapmap]
rs6978006	0.82[YRI][hapmap]
rs7793701	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794310	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116931800-116961600	Weak transcription	Placenta	Placenta
2	chr7:116937000-116954800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116945200-116954400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116952400-116960600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:116952600-116952800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:116952600-116954200	Weak transcription	Fetal Lung	lung

Quick Search: