Variant report

Variant	rs359656
Chromosome Location	chr7:127982031-127982032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:127982002-127984736	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127857539..127859442-chr7:127980846..127983357,2	K562	blood:
2	chr7:127980838..127984024-chr7:128045373..128047689,4	K562	blood:
3	chr7:127981986..127985324-chr7:128043786..128047324,3	K562	blood:
4	chr7:127981006..127985181-chr7:128044302..128047781,3	MCF-7	breast:
5	chr7:127981540..127985237-chr7:128094279..128097407,4	K562	blood:
6	chr7:127973213..127977895-chr7:127980902..127985287,5	MCF-7	breast:

No data

Variant related genes	Relation type
RNU7-27P	TF binding region
RBM28	TF binding region
ENSG00000273184	Chromatin interaction
ENSG00000106348	Chromatin interaction
ENSG00000240758	Chromatin interaction
ENSG00000106344	Chromatin interaction
ENSG00000135245	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1982402	1.00[AMR][1000 genomes]
rs28959470	1.00[AMR][1000 genomes]
rs359653	1.00[AMR][1000 genomes]
rs359654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs359657	1.00[AMR][1000 genomes]
rs4728102	1.00[AMR][1000 genomes]
rs6467172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972262	1.00[AMR][1000 genomes]
rs6979643	1.00[AMR][1000 genomes]
rs7788815	1.00[AMR][1000 genomes]
rs7811392	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921398	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9649515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv608400	chr7:127978820-128048194	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127939600-127982200	Weak transcription	Stomach Mucosa	stomach
2	chr7:127953800-127982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:127955800-127982800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:127974200-127982200	Weak transcription	Fetal Heart	heart
5	chr7:127974400-127982200	Weak transcription	NHLF	lung
6	chr7:127976000-127982800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:127976600-127982400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:127977000-127982400	Weak transcription	Colonic Mucosa	Colon
9	chr7:127977200-127982800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:127977400-127982200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:127977400-127982400	Weak transcription	Esophagus	oesophagus
12	chr7:127977400-127982400	Weak transcription	Spleen	Spleen
13	chr7:127977600-127983200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:127978000-127982400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:127978600-127982400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:127978800-127982200	Weak transcription	Brain Substantia Nigra	brain
17	chr7:127978800-127982400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:127978800-127982600	Weak transcription	NH-A	brain
19	chr7:127979000-127982400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr7:127979200-127982600	Weak transcription	Brain Anterior Caudate	brain
21	chr7:127979400-127982200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:127979400-127982400	Weak transcription	NHDF-Ad	bronchial
23	chr7:127979600-127982200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:127979600-127982200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr7:127979600-127982200	Weak transcription	Osteobl	bone
26	chr7:127979800-127982200	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:127979800-127982200	Weak transcription	Right Ventricle	heart
28	chr7:127979800-127982400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:127979800-127982400	Weak transcription	Fetal Intestine Large	intestine
30	chr7:127979800-127982600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:127980000-127982200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:127980000-127982200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:127980000-127982400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:127980000-127982400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:127980000-127982400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:127980000-127982400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:127980000-127982400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:127980000-127982600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:127980200-127982600	Weak transcription	Placenta	Placenta
40	chr7:127980400-127982200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:127980600-127982600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:127980800-127982200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr7:127980800-127982200	Enhancers	Hela-S3	cervix
44	chr7:127980800-127982400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr7:127980800-127982600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr7:127980800-127982800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr7:127981000-127982200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:127981000-127982200	Enhancers	Adipose Nuclei	Adipose
49	chr7:127981000-127982600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:127981200-127982200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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